Structure of the Mediator Head Module from S. cerevisiae
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G | SCOP2 Family | Mediator of RNA polymerase II transcription subunit 6 | 8046702 | 4005249 | SCOP2 (2022-06-29) |
| G | SCOP2 Superfamily | Mediator of RNA polymerase II transcription subunit 6 | 8091511 | 3002516 | SCOP2 (2022-06-29) |
| F | SCOP2 Family | Mediator of RNA polymerase II transcription subunit 20 | 8051031 | 4007167 | SCOP2 (2022-06-29) |
| F | SCOP2 Superfamily | CYTH-like phosphatases | 8091513 | 3001426 | SCOP2 (2022-06-29) |
| E | SCOP2 Family | Med18-like | 8045292 | 4004394 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | CYTH-like phosphatases | 8090011 | 3001426 | SCOP2 (2022-06-29) |
| D | SCOP2 Family | Mediator complex protein Med22-like | 8047863 | 4005853 | SCOP2 (2022-06-29) |
| D | SCOP2 Superfamily | Mediator subcomplex-like | 8051778 | 3001613 | SCOP2 (2022-06-29) |
| C | SCOP2 Family | Mediator of RNA polymerase II transcription subunit 8 | 8051697 | 4007479 | SCOP2 (2022-06-29) |
| C | SCOP2 Superfamily | Mediator of RNA polymerase II transcription subunit 8 | 8091509 | 3002515 | SCOP2 (2022-06-29) |
| B | SCOP2 Family | Mediator of RNA polymerase II transcription subunit 17 | 8051629 | 4007439 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Mediator of RNA polymerase II transcription subunit 17 | 8091516 | 3002517 | SCOP2 (2022-06-29) |
| A | SCOP2B Superfamily | Mediator subcomplex-like | 8051777 | 3001613 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G | ALO | e4gwpG2 | A: a/b three-layered sandwiches | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: ALO | ECOD (v294.1) |
| F | TetR_N | e4gwpF1 | A: a/b three-layered sandwiches | X: Globin-like | H: Nucleoside diphosphate kinases | T: Nucleoside diphosphate kinases | F: TetR_N | ECOD (v294.1) |
| E | CblD | e4gwpE1 | A: a/b three-layered sandwiches | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (v294.1) |
| D | e4gwpD1 | A: a/b three-layered sandwiches | X: Mediator of RNA polymerase II transcription subunit 22 | H: Mediator of RNA polymerase II transcription subunit 22 | T: Mediator of RNA polymerase II transcription subunit 22 | F: | ECOD (v294.1) | |
| C | e4gwpC1 | A: a/b three-layered sandwiches | X: Mediator of RNA polymerase II transcription subunit 22 | H: Mediator of RNA polymerase II transcription subunit 22 | T: Mediator of RNA polymerase II transcription subunit 22 | F: | ECOD (v294.1) | |
| B | e4gwpB1 | A: a/b three-layered sandwiches | X: Mediator of RNA polymerase II transcription subunit 22 | H: Mediator of RNA polymerase II transcription subunit 22 | T: Mediator of RNA polymerase II transcription subunit 22 | F: | ECOD (v294.1) | |
| A | Formyl_trans_N | e4gwpA1 | A: a/b three-layered sandwiches | X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | F: Formyl_trans_N | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF04934 | MED6 mediator sub complex component (Med6) | MED6 mediator sub complex component | - | Family | |
| PF09637 | Med18 protein (Med18) | Med18 protein | Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ... | Domain | |
| PF06179 | Surfeit locus protein 5 subunit 22 of Mediator complex (Med22) | Surfeit locus protein 5 subunit 22 of Mediator complex | - | Family | |
| PF10232 | Mediator of RNA polymerase II transcription complex subunit 8 (Med8) | Mediator of RNA polymerase II transcription complex subunit 8 | - | Family | |
| PF10280 | Mediator complex protein (Med11) | Mediator complex protein | - | Family |














