Annotations: 4GKP

Structure of the truncated neck and C-terminal motor homology domain of ViK1 from Candida glabrata

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	P-loop motor domain	8093001	3002036	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	P-loop motor domain	8093001	3002036	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Flav_NS3-hel_C	e4gkpB3	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Flav_NS3-hel_C	ECOD (v294.1)
A	Flav_NS3-hel_C	e4gkpA3	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Flav_NS3-hel_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.850.20	Alpha Beta	3-Layer(aba) Sandwich	Kinesin		CATH (4.3.0)
A	3.40.850.20	Alpha Beta	3-Layer(aba) Sandwich	Kinesin		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF16796	Microtubule binding (Microtub_bd)	Microtubule binding	This motor homology domain binds microtubules and lacks an ATP-binding site [1-2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Spindle pole body-associated protein VIK1	cytoskeletal protein binding microtubule binding protein binding binding tubulin binding	microtubule-based process cellular process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex kinesin complex microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR031852	Spindle pole body-associated protein Vik1/Cik1, microtubule binding domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.