Crystal structure of a Putative bacterial DNA binding protein (BVU_2165) from Bacteroides vulgatus ATCC 8482 at 2.25 A resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | DUF4469 | e4fmrD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4469 | ECOD (1.6) |
| D | HU-DNA_bdg | e4fmrD1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: HU-DNA_bdg | ECOD (1.6) |
| C | DUF4469 | e4fmrC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4469 | ECOD (1.6) |
| C | HU-DNA_bdg | e4fmrC1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: HU-DNA_bdg | ECOD (1.6) |
| B | DUF4469 | e4fmrB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4469 | ECOD (1.6) |
| B | HU-DNA_bdg | e4fmrB1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: HU-DNA_bdg | ECOD (1.6) |
| A | DUF4469 | e4fmrA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4469 | ECOD (1.6) |
| A | HU-DNA_bdg | e4fmrA1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: HU-DNA_bdg | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 2.70.50.70 | Mainly Beta | Distorted Sandwich | Coagulation Factor XIII | Chain A, domain 1 | CATH (4.3.0) |
| D | 4.10.520.10 | Few Secondary Structures | Irregular | HU Protein | Chain A | CATH (4.3.0) |
| C | 2.70.50.70 | Mainly Beta | Distorted Sandwich | Coagulation Factor XIII | Chain A, domain 1 | CATH (4.3.0) |
| C | 4.10.520.10 | Few Secondary Structures | Irregular | HU Protein | Chain A | CATH (4.3.0) |
| B | 2.70.50.70 | Mainly Beta | Distorted Sandwich | Coagulation Factor XIII | Chain A, domain 1 | CATH (4.3.0) |
| B | 4.10.520.10 | Few Secondary Structures | Irregular | HU Protein | Chain A | CATH (4.3.0) |
| A | 2.70.50.70 | Mainly Beta | Distorted Sandwich | Coagulation Factor XIII | Chain A, domain 1 | CATH (4.3.0) |
| A | 4.10.520.10 | Few Secondary Structures | Irregular | HU Protein | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF14848 | DNA-binding domain (HU-DNA_bdg) | DNA-binding domain | Domain | ||
| PF14734 | Domain of unknown function (DUF4469) with IG-like fold (DUF4469) | Domain of unknown function (DUF4469) with IG-like fold | A C-terminal domain in a large family of (predicted) secreted proteins with unknown functions from human gut bacteroides | Domain |
