4FMR

Crystal structure of a Putative bacterial DNA binding protein (BVU_2165) from Bacteroides vulgatus ATCC 8482 at 2.25 A resolution

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADUF4469e4fmrA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DUF4469ECOD (1.6)
AHU-DNA_bdge4fmrA1 A: alpha arraysX: HTHH: IHF-like DNA-binding proteins (From Topology)T: IHF-like DNA-binding proteinsF: HU-DNA_bdgECOD (1.6)
BDUF4469e4fmrB2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DUF4469ECOD (1.6)
BHU-DNA_bdge4fmrB1 A: alpha arraysX: HTHH: IHF-like DNA-binding proteins (From Topology)T: IHF-like DNA-binding proteinsF: HU-DNA_bdgECOD (1.6)
CDUF4469e4fmrC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DUF4469ECOD (1.6)
CHU-DNA_bdge4fmrC1 A: alpha arraysX: HTHH: IHF-like DNA-binding proteins (From Topology)T: IHF-like DNA-binding proteinsF: HU-DNA_bdgECOD (1.6)
DDUF4469e4fmrD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DUF4469ECOD (1.6)
DHU-DNA_bdge4fmrD1 A: alpha arraysX: HTHH: IHF-like DNA-binding proteins (From Topology)T: IHF-like DNA-binding proteinsF: HU-DNA_bdgECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.70.50.70 Mainly Beta Distorted Sandwich Coagulation Factor XIII Chain A, domain 1CATH (4.3.0)
A4.10.520.10 Few Secondary Structures Irregular HU Protein Chain ACATH (4.3.0)
B2.70.50.70 Mainly Beta Distorted Sandwich Coagulation Factor XIII Chain A, domain 1CATH (4.3.0)
B4.10.520.10 Few Secondary Structures Irregular HU Protein Chain ACATH (4.3.0)
C2.70.50.70 Mainly Beta Distorted Sandwich Coagulation Factor XIII Chain A, domain 1CATH (4.3.0)
C4.10.520.10 Few Secondary Structures Irregular HU Protein Chain ACATH (4.3.0)
D2.70.50.70 Mainly Beta Distorted Sandwich Coagulation Factor XIII Chain A, domain 1CATH (4.3.0)
D4.10.520.10 Few Secondary Structures Irregular HU Protein Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF14848DNA-binding domain (HU-DNA_bdg)DNA-binding domain- Domain
A, B, C, D
PF14734Domain of unknown function (DUF4469) with IG-like fold (DUF4469)Domain of unknown function (DUF4469) with IG-like foldA C-terminal domain in a large family of (predicted) secreted proteins with uknown functions from human gut bacteroidesDomain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR027824Domain of unknown function DUF4469 with IG-like foldDomain