4FIB | pdb_00004fib

Crystal structure of the ydhK protein from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR518A.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CRibosomal_L7Aee4fibC1 A: alpha bundlesX: Long alpha-hairpinH: C-terminal UvrC-binding domain of UvrBT: C-terminal UvrC-binding domain of UvrBF: Ribosomal_L7AeECOD (develop294)
CGlyco_hydro_18,ChitinaseA_Ne4fibC2 A: alpha bundlesX: C-terminal domain in some PLP-dependent transferasesH: C-terminal domain in some PLP-dependent transferasesT: C-terminal domain in some PLP-dependent transferasesF: Glyco_hydro_18,ChitinaseA_NECOD (develop294)
BRibosomal_L7Aee4fibB1 A: alpha bundlesX: Long alpha-hairpinH: C-terminal UvrC-binding domain of UvrBT: C-terminal UvrC-binding domain of UvrBF: Ribosomal_L7AeECOD (develop294)
BGlyco_hydro_18,ChitinaseA_Ne4fibB2 A: alpha bundlesX: C-terminal domain in some PLP-dependent transferasesH: C-terminal domain in some PLP-dependent transferasesT: C-terminal domain in some PLP-dependent transferasesF: Glyco_hydro_18,ChitinaseA_NECOD (develop294)
ARibosomal_L7Aee4fibA1 A: alpha bundlesX: Long alpha-hairpinH: C-terminal UvrC-binding domain of UvrBT: C-terminal UvrC-binding domain of UvrBF: Ribosomal_L7AeECOD (develop294)
AGlyco_hydro_18,ChitinaseA_Ne4fibA2 A: alpha bundlesX: C-terminal domain in some PLP-dependent transferasesH: C-terminal domain in some PLP-dependent transferasesT: C-terminal domain in some PLP-dependent transferasesF: Glyco_hydro_18,ChitinaseA_NECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.30.30.1130 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
C2.40.10.520 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
B2.30.30.1130 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
B2.40.10.520 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
A2.30.30.1130 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
A2.40.10.520 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF07563Protein of unknown function (DUF1541) (DUF1541)Protein of unknown function (DUF1541)- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR011438Domain of unknown function DUF1541Domain