Crystal structures of protease nexin-1 in complex with S195A thrombin
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | d4dy7f_ | Multi-domain proteins (alpha and beta) | Serpins | Serpins | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| C | d4dy7c_ | Multi-domain proteins (alpha and beta) | Serpins | Serpins | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F | SCOP2 Family | Serpins | 8070196 | 4002658 | SCOP2 (2022-06-29) |
| F | SCOP2 Superfamily | Serpins | 8070197 | 3001563 | SCOP2 (2022-06-29) |
| C | SCOP2B Superfamily | Serpins | 8070197 | 3001563 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Trypsin-like serine proteases | 8042154 | 3000114 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Trypsin-like serine proteases | 8042154 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | FtsJ | e4dy7F1 | A: alpha arrays | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: FtsJ | ECOD (v295.2) |
| C | FtsJ | e4dy7C1 | A: alpha arrays | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: FtsJ | ECOD (v295.2) |
| E | Med6 | e4dy7E1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Med6 | ECOD (v295.2) |
| B | Med6 | e4dy7B1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Med6 | ECOD (v295.2) |
| D | Med6 | e4dy7D1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Med6 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F | 3.30.497.10 | Alpha Beta | 2-Layer Sandwich | Antithrombin | Chain I, domain 2 | CATH (4.3.0) |
| F | 2.30.39.10 | Mainly Beta | Roll | Alpha-1-antitrypsin | domain 1 | CATH (4.3.0) |
| C | 3.30.497.10 | Alpha Beta | 2-Layer Sandwich | Antithrombin | Chain I, domain 2 | CATH (4.3.0) |
| C | 2.30.39.10 | Mainly Beta | Roll | Alpha-1-antitrypsin | domain 1 | CATH (4.3.0) |
| E | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
| B | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
| A | 4.10.140.10 | Few Secondary Structures | Irregular | Epsilon-Thrombin | Chain L | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00079 | Serpin (serine protease inhibitor) (Serpin) | Serpin (serine protease inhibitor) | Structure is a multi-domain fold containing a bundle of helices and a beta sandwich. | Domain | |
| PF00089 | Trypsin (Trypsin) | Trypsin | Domain | ||