4DKM | pdb_00004dkm

Crystal Structure of Amphioxus GFPc1a

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d4dkmh_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
G	d4dkmg_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
F	d4dkmf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
E	d4dkme_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
D	d4dkmd_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
C	d4dkmc_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
B	d4dkmb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
A	d4dkma_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	GFP	e4dkmH1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
G	GFP	e4dkmG1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
F	GFP	e4dkmF1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
E	GFP	e4dkmE1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
D	GFP	e4dkmD1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
C	GFP	e4dkmC1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
B	GFP	e4dkmB1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
A	GFP	e4dkmA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Amphioxus Green Fluorescent Protein, GFPc1a	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.