4DKM | pdb_00004dkm

Crystal Structure of Amphioxus GFPc1a

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d4dkmh_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
G	d4dkmg_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
F	d4dkmf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
E	d4dkme_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
D	d4dkmd_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
C	d4dkmc_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
B	d4dkmb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)
A	d4dkma_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Florida lancelet (Branchiostoma floridae ) [TaxId: 7739 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	HSP70	e4dkmH1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: HSP70	ECOD (v294.1)
G	HSP70	e4dkmG1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: HSP70	ECOD (v294.1)
F	HSP70	e4dkmF1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: HSP70	ECOD (v294.1)
E	HSP70	e4dkmE1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: HSP70	ECOD (v294.1)
D	HSP70	e4dkmD1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: HSP70	ECOD (v294.1)
C	HSP70	e4dkmC1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: HSP70	ECOD (v294.1)
B	HSP70	e4dkmB1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: HSP70	ECOD (v294.1)
A	14-3-3	e4dkmA1	A: a/b three-layered sandwiches	X: SSHS domain	H: Class II aaRS and biotin synthetases	T: Ribosome modulation factor	F: 14-3-3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Amphioxus Green Fluorescent Protein, GFPc1a	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.