4DAM | pdb_00004dam

Crystal structure of small single-stranded DNA-binding protein from Streptomyces coelicolor

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d4daml_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
K	d4damk1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
K	d4damk2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
J	d4damj_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
I	d4dami_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
H	d4damh_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
G	d4damg1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
G	d4damg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
F	d4damf_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
E	d4dame1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
E	d4dame2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
D	d4damd_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
C	d4damc1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
C	d4damc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
B	d4damb_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
A	d4dama1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
A	d4dama2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
A	SCOP2 Family	Single strand DNA-binding domain, SSB	8083880	4000346	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	PHP	e4damL2	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PHP	ECOD (v294.1)
K	V-set	e4damK1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
J	PHP	e4damJ2	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PHP	ECOD (v294.1)
I	V-set	e4damI1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
H	V-set	e4damH1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
G	PHP	e4damG2	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PHP	ECOD (v294.1)
F	V-set	e4damF1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
E	RRP40_S1	e4damE2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: RRP40_S1	ECOD (v294.1)
D	RRP40_S1	e4damD2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: RRP40_S1	ECOD (v294.1)
C	YbeY	e4damC1	A: a/b three-layered sandwiches	X: Globin-like	H: Ring-building motif I in type III secretion system	T: Ring-building motif I in type III secretion system	F: YbeY	ECOD (v294.1)
B	V-set	e4damB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
A	YbeY	e4damA1	A: a/b three-layered sandwiches	X: Globin-like	H: Ring-building motif I in type III secretion system	T: Ring-building motif I in type III secretion system	F: YbeY	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
K	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
J	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
I	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
H	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
G	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
F	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
E	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
D	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
C	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
B	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
A	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00436	Single-strand binding protein family (SSB)	Single-strand binding protein family	This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Single-stranded DNA-binding protein 1	enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity DNA binding binding single-stranded DNA binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	cellular anatomical structure nucleoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000424	Primosome PriB/single-strand DNA-binding	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011344	Single-stranded DNA-binding protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.