4DAM | pdb_00004dam

Crystal structure of small single-stranded DNA-binding protein from Streptomyces coelicolor

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4dama1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
A	d4dama2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
B	d4damb_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
I	d4dami_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
L	d4daml_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
K	d4damk1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
K	d4damk2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
J	d4damj_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
H	d4damh_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
G	d4damg1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
G	d4damg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
F	d4damf_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
E	d4dame1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
E	d4dame2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
D	d4damd_	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
C	d4damc1	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)
C	d4damc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces coelicolor ) [TaxId: 1902 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Single strand DNA-binding domain, SSB	8083880	4000346	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleic acid-binding proteins	8083881	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SSB	e4damA1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
B	SSB	e4damB1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
I	SSB	e4damI1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
L	SSB	e4damL2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
K	SSB	e4damK1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
J	SSB	e4damJ2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
H	SSB	e4damH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
G	SSB	e4damG2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
F	SSB	e4damF1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
E	SSB	e4damE2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
D	SSB	e4damD2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)
C	SSB	e4damC1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: SSB	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
B	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
I	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
L	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
K	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
J	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
H	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
G	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
F	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
E	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
D	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
C	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00436	Single-strand binding protein family (SSB)	Single-strand binding protein family	This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Single-stranded DNA-binding protein 1	enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity DNA binding binding single-stranded DNA binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	cellular anatomical structure nucleoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000424	Primosome PriB/single-strand DNA-binding	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011344	Single-stranded DNA-binding protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.