4BMJ | pdb_00004bmj

Structure of the UBZ1and2 tandem of the ubiquitin-binding adaptor protein TAX1BP1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K	SBP_bac_1	e4bmjK1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)
J	LysR_substrate	e4bmjJ1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (v294.1)
I	SBP_bac_1	e4bmjI1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)
H	RrnaAD	e4bmjH1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Protease propeptides/inhibitors	T: Protease propeptides/inhibitors	F: RrnaAD	ECOD (v294.1)
G	SBP_bac_1	e4bmjG1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)
F	SBP_bac_1	e4bmjF1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)
E	SBP_bac_1	e4bmjE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)
D	SBP_bac_1	e4bmjD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)
C	VipB_2	e4bmjC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: VipB_2	ECOD (v294.1)
B	SBP_bac_1	e4bmjB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)
A	SBP_bac_1	e4bmjA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
J	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
I	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
H	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
G	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
F	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
E	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
D	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
C	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
B	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)
A	6.20.250.40	Special	Other non-globular	Double Stranded RNA Binding Domain		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	PF18112	Autophagy receptor zinc finger-C2H2 domain (Zn-C2H2_12)	Autophagy receptor zinc finger-C2H2 domain	This domain is found in calcium-binding and coiled-coil domain 2/NDP25 (CALCOCO2/NDP25) found in Homo sapiens. CALCOCO2/NDP25 is an ubiquitin-binding autophagy receptor involved in the selective autophagic degradation of invading pathogens. This doma ...	This domain is found in calcium-binding and coiled-coil domain 2/NDP25 (CALCOCO2/NDP25) found in Homo sapiens. CALCOCO2/NDP25 is an ubiquitin-binding autophagy receptor involved in the selective autophagic degradation of invading pathogens. This domain is a typical C2H2-type zinc finger which specifically recognizes mono-ubiquitin or poly-ubiquitin chain. The overall ubiquitin-binding mode utilizes the C-terminal alpha-helix to interact with the solvent-exposed surface of the central beta-sheet of ubiquitin, similar to that observed in the RABGEF1/Rabex-5 or POLN/Pol-eta zinc finger [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	TAX1-BINDING PROTEIN 1	protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity protein binding binding kinase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway negative regulation of biological process regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway negative regulation of biological process regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway regulation of biological process immune response response to other organism immune response-activating cell surface receptor signaling pathway regulation of innate immune response response to external stimulus regulation of toll-like receptor 4 signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus negative regulation of signaling signaling positive regulation of biological process innate immune response activating cell surface receptor signaling pathway negative regulation of cell communication positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress negative regulation of cellular process innate immune response response to external biotic stimulus negative regulation of toll-like receptor 4 signaling pathway cell surface pattern recognition receptor signaling pathway regulation of signaling positive regulation of innate immune response cell surface receptor signaling pathway negative regulation of response to stimulus defense response biological regulation defense response to symbiont negative regulation of signal transduction negative regulation of immune system process immune system process toll-like receptor 4 signaling pathway regulation of cell communication cellular process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death negative regulation of intracellular signal transduction negative regulation of canonical NF-kappaB signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction catabolic process autophagy metabolic process process utilizing autophagic mechanism localization protein localization to phagocytic vesicle protein localization to organelle macromolecule localization intracellular protein localization response to cytokine cytokine-mediated signaling pathway negative regulation of interleukin-1-mediated signaling pathway cellular response to cytokine stimulus regulation of interleukin-1-mediated signaling pathway regulation of cytokine-mediated signaling pathway response to peptide cellular response to interleukin-1 regulation of response to cytokine stimulus negative regulation of response to cytokine stimulus negative regulation of cytokine-mediated signaling pathway response to chemical interleukin-1-mediated signaling pathway response to interleukin-1 cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway negative regulation of cytoplasmic pattern recognition receptor signaling pathway regulation of cytoplasmic pattern recognition receptor signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway regulation of tumor necrosis factor-mediated signaling pathway negative regulation of tumor necrosis factor-mediated signaling pathway response to tumor necrosis factor	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytosol cytoplasmic vesicle intracellular vesicle vacuole autophagosome phagophore assembly site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	IPR041611	SKICH domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	IPR051002	Ubiquitin-binding and autophagy-associated domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	IPR012852	Calcium binding and coiled-coil domain-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	IPR041641	CALCOCO1/2, zinc finger UBZ1-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	Pharos: Q86VP1	hypospadias allergic rhinitis juvenile dermatomyositis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis dermatomyositis Malignant neoplasm of breast ovarian cancer plasma cell myeloma spina bifida myopathy pancreatic intraductal papillary-mucinous carcinoma prostate carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.