4ACO
Structure of the budding yeast Ndc10 N-terminal domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ndc10 N-terminal domain-like | 8053777 | 4007620 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Ndc10 DNA-binding domain-like | 8046150 | 4004910 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | lambda integrase clamp domain-like | 8053778 | 3000550 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | DNA breaking-rejoining enzymes | 8053766 | 3001127 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16787 | e4acoA3 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: PF16787 | ECOD (1.6) |
A | PF21400 | e4acoA1 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: PF21400 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 1.10.443.20 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21400 | Ndc10 N-terminal domain (Ndc10_N) | Ndc10 N-terminal domain | Kinetochores link centromeric DNA to spindle microtubules and ensure faithful chromosome segregation during mitosis. In point-centromere yeasts, the CBF3 complex Skp1-Ctf13-(Cep3)(2)-(Ndc10)recognizes a conserved centromeric DNA element through conta ... | Domain | |
PF16787 | Centromere DNA-binding protein complex CBF3 subunit, domain 2 (NDC10_II) | Centromere DNA-binding protein complex CBF3 subunit, domain 2 | NDC10_II is a the second of five domains on the Kluyveromyces lactis Ndc10 protein. Each subunit of the Ndc10 dimer binds a separate fragment of DNA, suggesting that Ndc10 stabilises a DNA loop at the centromere [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR022210 | Transcription activator GCR1-like domain | Domain | |
IPR049055 | NDC10, N-terminal domain | Domain | |
IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily | |
IPR038279 | Ndc10, domain 2 superfamily | Homologous Superfamily | |
IPR031872 | Ndc10, domain 2 | Domain |