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Data API
4ZZF
|
pdb_00004zzf
Crystal structure of truncated FlgD (tetragonal form) from the human pathogen Helicobacter pylori
External Resource: Annotation
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
FlgD_ig
e4zzfA1
A: a/b three-layered sandwiches
X: Lipocalins/Streptavidin
H: Immunoglobulin-related
T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
F: FlgD_ig
ECOD (v294.1)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
2.60.40.4070
Mainly Beta
Sandwich
Immunoglobulin-like
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF13860
FlgD Ig-like domain (FlgD_ig)
FlgD Ig-like domain
This domain has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it is inserted within a TUDOR like beta barrel domain [1].
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Flagellar basal body rod modification protein
-
cellular component organization
bacterial-type flagellum organization
organelle organization
cell projection organization
cellular process
cellular component organization or biogenesis
bacterial-type flagellum basal body
cell projection
cellular anatomical structure
organelle
membraneless organelle
bacterial-type flagellum
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR005648
Flagellar hook capping protein
Family
A
IPR025965
FlgD/Vpr, Ig-like domain
Domain
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