4ZPN | pdb_00004zpn

Crystal Structure of Protocadherin Gamma C5 EC1-3 with extended N-terminus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Cadherin-like	8091938	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091940	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091939	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091938	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091940	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091939	3002049	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Cadherin_2	e4zpnB3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
B	Cadherin	e4zpnB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
A	Cadherin_2	e4zpnA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
A	Cadherin	e4zpnA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08266	Cadherin-like (Cadherin_2)	Cadherin-like	This cadherin domain is usually the most N-terminal copy of the domain.	Domain
A, B	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	MCG133388, isoform CRA_f	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	cell adhesion cellular process cell-cell adhesion homophilic cell-cell adhesion cellular component organization cell junction organization synapse organization cellular component organization or biogenesis regulation of biological process neuron apoptotic process regulation of cellular process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process cell adhesion cellular process cell-cell adhesion homophilic cell-cell adhesion cellular component organization cell junction organization synapse organization cellular component organization or biogenesis regulation of biological process neuron apoptotic process regulation of cellular process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of neuron apoptotic process	cellular anatomical structure membrane cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR031904	Cadherin, C-terminal catenin-binding domain	Domain
A, B	IPR032455	Cadherin, cytoplasmic C-terminal domain	Domain
A, B	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A, B	IPR013164	Cadherin, N-terminal	Domain
A, B	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A, B	IPR020894	Cadherin conserved site	Conserved Site
A, B	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.