4ZPL | pdb_00004zpl

Crystal Structure of Protocadherin Beta 1 EC1-3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cadherin	8050647	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091960	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091961	4007535	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091962	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091963	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091964	3002049	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ble-like_N	e4zplA1	A: a/b three-layered sandwiches	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Ble-like_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain
A	PF08266	Cadherin-like (Cadherin_2)	Cadherin-like	This cadherin domain is usually the most N-terminal copy of the domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein Pcdhb1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	cell adhesion cell-cell adhesion homophilic cell-cell adhesion cellular process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A	IPR020894	Cadherin conserved site	Conserved Site
A	IPR032455	Cadherin, cytoplasmic C-terminal domain	Domain
A	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A	IPR013164	Cadherin, N-terminal	Domain
A	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.