Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyYefM-like 8092244 3000907 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyYefM-like 8092244 3000907 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyYefM-like 8092244 3000907 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyYefM-like 8092244 3000907 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhdYeFM_antitoxe4zm0A1 A: a+b duplicates or obligate multimersX: YefM-like (From Topology)H: YefM-like (From Topology)T: YefM-likeF: PhdYeFM_antitoxECOD (1.6)
BPhdYeFM_antitoxe4zm0B1 A: a+b duplicates or obligate multimersX: YefM-like (From Topology)H: YefM-like (From Topology)T: YefM-likeF: PhdYeFM_antitoxECOD (1.6)
CPhdYeFM_antitoxe4zm0C1 A: a+b duplicates or obligate multimersX: YefM-like (From Topology)H: YefM-like (From Topology)T: YefM-likeF: PhdYeFM_antitoxECOD (1.6)
DPhdYeFM_antitoxe4zm0D1 A: a+b duplicates or obligate multimersX: YefM-like (From Topology)H: YefM-like (From Topology)T: YefM-likeF: PhdYeFM_antitoxECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domainCATH (4.3.0)
B3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domainCATH (4.3.0)
C3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domainCATH (4.3.0)
D3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF02604Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox)Antitoxin Phd_YefM, type II toxin-antitoxin systemMembers of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ...Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2]. This domain complexes with Txe toxins containing Pfam:PF06769, Fic/DOC toxins containing Pfam:PF02661 and YafO toxins containing Pfam:PF13957.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Antitoxin phd
E, G
DNA/RNA (5'-D(CP*TP*TP*GP*TP*GP*TP*AP*CP*AP*CP*AP*T)-3')---
F, H
DNA/RNA (5'-D(CP*AP*TP*GP*TP*GP*TP*AP*CP*AP*CP*AP*A)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR006442Type II toxin-antitoxin system, antitoxin Phd/YefMFamily
A, B, C, D
IPR036165YefM-like superfamilyHomologous Superfamily