4Z88

SH3-II of Drosophila Rim-binding protein with Aplip1 peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SH3_1	e4z88A1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
B	SH3_1	e4z88B1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
C	SH3_1	e4z88C1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
D	SH3_1	e4z88D1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
E	SH3_1	e4z88E1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
G	SH3_1	e4z88G1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
H	SH3_1	e4z88H1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
J	SH3_1	e4z88J1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
K	SH3_1	e4z88K1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
L	SH3_1	e4z88L1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
F	SH3_1	e4z88F1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
I	SH3_1	e4z88I1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
C	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
D	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
E	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
G	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
H	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
J	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
K	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
L	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
F	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
I	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07653	Variant SH3 domain (SH3_2)	Variant SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	RIM-binding protein, isoform F	-	cellular component organization organelle organization cortical cytoskeleton organization cellular process cellular component organization or biogenesis cytoskeleton organization cytoskeletal matrix organization at active zone cell junction organization presynaptic active zone organization synapse organization trans-synaptic signaling regulation of biological process signaling biological regulation cellular component organization organelle organization cortical cytoskeleton organization cellular process cellular component organization or biogenesis cytoskeleton organization cytoskeletal matrix organization at active zone cell junction organization presynaptic active zone organization synapse organization trans-synaptic signaling regulation of biological process signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling anterograde trans-synaptic signaling neuromuscular synaptic transmission	neuromuscular junction synapse cell junction cellular anatomical entity intracellular anatomical structure cell cortex cortical cytoskeleton cytoskeleton of presynaptic active zone cytoplasmic region presynaptic active zone cytoplasmic component presynaptic cytoskeleton intracellular organelle cell periphery presynapse neuromuscular junction synapse cell junction cellular anatomical entity intracellular anatomical structure cell cortex cortical cytoskeleton cytoskeleton of presynaptic active zone cytoplasmic region presynaptic active zone cytoplasmic component presynaptic cytoskeleton intracellular organelle cell periphery presynapse cytoskeleton organelle intracellular non-membrane-bounded organelle cell cortex region cytoplasm non-membrane-bounded organelle presynaptic active zone
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	JNK-interacting protein 1	protein binding binding kinase binding enzyme binding protein kinase binding cytoskeletal protein binding kinesin binding MAP-kinase scaffold activity protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity identical protein binding	establishment of organelle localization cellular localization organelle transport along microtubule transport establishment of mitochondrion localization intracellular transport axonal transport establishment of localization localization mitochondrion localization establishment of mitochondrion localization, microtubule-mediated axo-dendritic transport mitochondrion transport along microtubule organelle localization establishment of localization in cell establishment of organelle localization cellular localization organelle transport along microtubule transport establishment of mitochondrion localization intracellular transport axonal transport establishment of localization localization mitochondrion localization establishment of mitochondrion localization, microtubule-mediated axo-dendritic transport mitochondrion transport along microtubule organelle localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process axonal transport of mitochondrion regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation presynapse organization regulation of terminal button organization terminal button organization cellular component organization regulation of synapse organization cell junction organization regulation of presynapse organization regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality cellular response to stimulus regulation of signaling response to stimulus signaling regulation of JNK cascade regulation of signal transduction regulation of MAPK cascade intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus JNK cascade intracellular signaling cassette MAPK cascade regulation of cell communication signal transduction vesicle cytoskeletal trafficking vesicle transport along microtubule synaptic vesicle localization vesicle localization anterograde axonal transport establishment of vesicle localization anterograde synaptic vesicle transport synaptic vesicle cytoskeletal transport synaptic vesicle transport along microtubule synaptic vesicle transport retrograde synaptic vesicle transport retrograde axonal transport	axon cell projection neuron projection cellular anatomical entity plasma membrane bounded cell projection neuron projection cytoplasm intracellular anatomical structure axon cytoplasm cytoplasmic region plasma membrane bounded cell projection cytoplasm cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003961	Fibronectin type III	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR035753	RIMS-binding protein, second SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001452	SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR035755	RIMS-binding protein, third SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR040325	RIMS-binding protein 1/2/3	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR047178	JNK-interacting protein 1	Family
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR006020	PTB/PI domain	Domain
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR001452	SH3 domain	Domain
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR036028	SH3-like domain superfamily	Homologous Superfamily
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR011993	PH-like domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	ACE	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	NH2	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.