4YWH | pdb_00004ywh

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM ACTINOBACILLUS SUCCINOGENES 130Z (Asuc_0499, TARGET EFI-511068) WITH BOUND D-XYLOSE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4ywhb_	Alpha and beta proteins (a/b)	Periplasmic binding protein-like I	Periplasmic binding protein-like I	automated matches	automated matches	(Actinobacillus succinogenes 130Z ) [TaxId: 339671 ],	SCOPe (2.08)
A	d4ywha1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like I	Periplasmic binding protein-like I	automated matches	automated matches	(Actinobacillus succinogenes 130Z ) [TaxId: 339671 ],	SCOPe (2.08)
A	d4ywha2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Actinobacillus succinogenes 130Z ) [TaxId: 339671 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	L-arabinose binding protein-like	8071241	4000206	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Type 1 solute binding protein-like	8071242	3000125	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Type 1 solute binding protein-like	8071242	3000125	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	FAA_hydrolase	e4ywhB1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: FAA_hydrolase	ECOD (v294.1)
A	FAA_hydrolase	e4ywhA1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: FAA_hydrolase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
A	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13407	Periplasmic binding protein domain (Peripla_BP_4)	Periplasmic binding protein domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ABC TRANSPORTER SOLUTE BINDING PROTEIN	hydrolase activity catalytic activity binding monosaccharide binding carbohydrate binding small molecule binding	transmembrane transport localization D-xylose transmembrane transport pentose transmembrane transport transport carbohydrate transport cellular process monosaccharide transmembrane transport carbohydrate transmembrane transport establishment of localization	cellular anatomical structure extracellular region outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR025997	Periplasmic binding protein	Domain
A, B	IPR013456	D-xylose-binding periplasmic protein	Family
A, B	IPR028082	Periplasmic binding protein-like I	Homologous Superfamily
A, B	IPR050555	Bacterial Solute-Binding Protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.