4YWC

Crystal structure of Myc3(5-242) fragment in complex with Jaz9(218-239) peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GAF domain-like	8053394	3000080	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	GAF domain-like	8053394	3000080	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	CCT motif-like	8053393	3002182	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CCT motif-like	8053393	3002182	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF14215	e4ywcA1	A: a+b three layers	X: Profilin-like	H: sensor domains (From Topology)	T: sensor domains	F: PF14215	ECOD (1.6)
C [auth B]	PF14215	e4ywcB1	A: a+b three layers	X: Profilin-like	H: sensor domains (From Topology)	T: sensor domains	F: PF14215	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal (bHLH-MYC_N)	bHLH-MYC and R2R3-MYB transcription factors N-terminal	-	Family
B [auth C], D	PF09425	Jas motif (Jas_motif)	Jas motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B]	Transcription factor MYC3	DNA binding binding organic cyclic compound binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity transcription factor binding bHLH transcription factor binding DNA-binding transcription factor binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process cellular process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process anthocyanin-containing compound biosynthetic process pigment metabolic process flavonoid metabolic process anthocyanin-containing compound metabolic process flavonoid biosynthetic process pigment biosynthetic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process response to organic substance response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound developmental process multicellular organism development multicellular organismal process stomatal complex development plant epidermis development anatomical structure development post-embryonic development tissue development cellular response to stimulus cellular response to nitrogen compound cellular response to ATP signaling response to organophosphorus cell communication cellular response to endogenous stimulus signal transduction cellular response to organic substance response to organic cyclic compound response to organonitrogen compound cellular response to organic cyclic compound response to nitrogen compound response to ATP response to purine-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to organonitrogen compound extracellular ATP signaling defense response response to stress	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity
B [auth C], D	Protein TIFY 7	-	response to stimulus defense response response to stress response to organic substance response to lipid response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B]	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	Domain
A, C [auth B]	IPR045084	Transcription factor AIB/MYC-like	Family
A, C [auth B]	IPR025610	Transcription factor MYC/MYB N-terminal	Domain
A, C [auth B]	IPR036638	Helix-loop-helix DNA-binding domain superfamily	Homologous Superfamily
B [auth C], D	IPR040390	TIFY/JAZ family	Family
B [auth C], D	IPR018467	CO/COL/TOC1, conserved site	Conserved Site
B [auth C], D	IPR010399	Tify domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.