4YVS | pdb_00004yvs

crystal structure of the virus-like particle of a c4 strain EV71


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth N]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ORibosomal_S7e4yvsO1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
N [auth L]Ribosomal_S7e4yvsL1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
M [auth I]Ribosomal_S7e4yvsI1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
L [auth F]Ribosomal_S7e4yvsF1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
CRibosomal_S7e4yvsC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
K [auth N]Ribosomal_S7e4yvsN1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
J [auth K]Ribosomal_S7e4yvsK1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
I [auth H]Ribosomal_S7e4yvsH1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
H [auth E]Ribosomal_S7e4yvsE1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
BRibosomal_S7e4yvsB1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
G [auth M]Ribosomal_S7e4yvsM1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
F [auth J]Ribosomal_S7e4yvsJ1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
E [auth G]Ribosomal_S7e4yvsG1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
DRibosomal_S7e4yvsD1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
ARibosomal_S7e4yvsA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
O2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
N [auth L]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M [auth I]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L [auth F]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K [auth N]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J [auth K]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I [auth H]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H [auth E]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G [auth M]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F [auth J]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E [auth G]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C,
L [auth F],
M [auth I],
N [auth L],
O
Capsid protein VP0
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
Capsid protein VP3
A,
D,
E [auth G],
F [auth J],
G [auth M]
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR059138Picornavirus capsid VP1Domain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR002527Picornavirus 2B proteinDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR003593AAA+ ATPase domainDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR003138Picornavirus coat protein VP4Family
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR000199Peptidase C3A/C3B, picornaviralDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR001676Picornavirus capsidDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR000081Peptidase C3, picornavirus core protein 2ADomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR029053Viral coat protein subunitHomologous Superfamily
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR009003Peptidase S1, PA clanHomologous Superfamily
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR044067Picornavirales 3C/3C-like protease domainDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR033703Picornavirus/Calicivirus coat proteinDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR014838Poliovirus 3A protein-likeDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C,
L [auth F],
M [auth I],
N [auth L],
O
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR059138Picornavirus capsid VP1Domain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR002527Picornavirus 2B proteinDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR003593AAA+ ATPase domainDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR003138Picornavirus coat protein VP4Family
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR000199Peptidase C3A/C3B, picornaviralDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR001676Picornavirus capsidDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR029053Viral coat protein subunitHomologous Superfamily
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR009003Peptidase S1, PA clanHomologous Superfamily
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR044067Picornavirales 3C/3C-like protease domainDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR033703Picornavirus/Calicivirus coat proteinDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR014838Poliovirus 3A protein-likeDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B,
H [auth E],
I [auth H],
J [auth K],
K [auth N]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR059138Picornavirus capsid VP1Domain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR002527Picornavirus 2B proteinDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR003593AAA+ ATPase domainDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR003138Picornavirus coat protein VP4Family
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR000199Peptidase C3A/C3B, picornaviralDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR001676Picornavirus capsidDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR029053Viral coat protein subunitHomologous Superfamily
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR009003Peptidase S1, PA clanHomologous Superfamily
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR044067Picornavirales 3C/3C-like protease domainDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR033703Picornavirus/Calicivirus coat proteinDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR014838Poliovirus 3A protein-likeDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A,
D,
E [auth G],
F [auth J],
G [auth M]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain