4YRD | pdb_00004yrd

Crystal structure of CapF with inhibitor 3-isopropenyl-tropolone


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be4yrdB1 A: a/b three-layered sandwichesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F:ECOD (v294.1)
BRibosomal_S5_Ce4yrdB2 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Ribosomal_S5_CECOD (v294.1)
Ae4yrdA2 A: a/b three-layered sandwichesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F:ECOD (v294.1)
ARibosomal_S5_Ce4yrdA3 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Ribosomal_S5_CECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B2.60.120.10 Mainly Beta Sandwich Jelly Rolls Jelly RollsCATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A2.60.120.10 Mainly Beta Sandwich Jelly Rolls Jelly RollsCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Capsular polysaccharide synthesis enzyme Cap5F - -