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 4YLE | pdb_00004yle

Crystal structure of an ABC transpoter solute binding protein (IPR025997) from Burkholderia multivorans (Bmul_1631, Target EFI-511115) with an unknown ligand modelled as alpha-D-erythrofuranose

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4ylea_ Alpha and beta proteins (a/b) Periplasmic binding protein-like I Periplasmic binding protein-like I automated matches automated matches (Burkholderia multivorans ATCC 17616 ) [TaxId: 395019 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APDCD9e4yleA1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PDCD9ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13407Periplasmic binding protein domain (Peripla_BP_4)Periplasmic binding protein domainThis domain is found in a variety of bacterial periplasmic binding proteins. This domain recognises fructose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Periplasmic binding protein/LacI transcriptional regulator -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
IPR025997Periplasmic binding proteinDomain
IPR028082Periplasmic binding protein-like IHomologous Superfamily