4Y4Y | pdb_00004y4y

T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (C2 crystal form)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ed4y4ye_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Kd4y4yk_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Pd4y4yp_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Yd4y4yy_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Zd4y4yz_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Xd4y4yx_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Wd4y4yw_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Vd4y4yv_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ud4y4yu_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Td4y4yt_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Sd4y4ys_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Rd4y4yr_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Qd4y4yq_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Od4y4yo_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Nd4y4yn_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Md4y4ym_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ld4y4yl_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Jd4y4yj_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Id4y4yi_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Hd4y4yh_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Gd4y4yg_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Fd4y4yf_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Dd4y4yd_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Cd4y4yc_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Bd4y4yb_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ad4y4ya_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EViral_coate4y4yE1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
KViral_coate4y4yK1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
PViral_coate4y4yP1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
YViral_coate4y4yY1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
ZViral_coate4y4yZ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
XViral_coate4y4yX1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
WViral_coate4y4yW1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
VViral_coate4y4yV1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
UViral_coate4y4yU1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
TViral_coate4y4yT1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
SViral_coate4y4yS1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
RViral_coate4y4yR1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
QViral_coate4y4yQ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
OViral_coate4y4yO1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
NViral_coate4y4yN1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
MViral_coate4y4yM1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
LViral_coate4y4yL1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
JViral_coate4y4yJ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
IViral_coate4y4yI1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
HViral_coate4y4yH1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
GViral_coate4y4yG1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
FViral_coate4y4yF1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DA [auth d]Viral_coate4y4yd1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DViral_coate4y4yD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CA [auth c]Viral_coate4y4yc1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CViral_coate4y4yC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BA [auth b]Viral_coate4y4yb1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BViral_coate4y4yB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
AA [auth a]Viral_coate4y4ya1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
AViral_coate4y4yA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
P2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Y2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Z2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
X2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
W2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
V2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
U2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
T2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
S2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
R2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Q2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
O2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
N2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
DA [auth d]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
CA [auth c]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
BA [auth b]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
AA [auth a]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Immunoglobulin G-binding protein A,Coat protein -