4XVM
Binary complex of human polymerase nu and DNA with the finger domain closed and thumb domain rotated out
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DNA_pol_A_2nd | e4xvmA3 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: DNA_pol_A_2nd | ECOD (1.6) |
A | DNA_pol_A_1st | e4xvmA4 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: DNA_pol_A_1st | ECOD (1.6) |
A | DNA_pol_A_3rd | e4xvmA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_A_3rd | ECOD (1.6) |
A | DNA_polA_I_Bacillus_like_exo_like | e4xvmA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_polA_I_Bacillus_like_exo_like | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18049 | DNA polymerase nu pseudo-exo (DNA_pol_P_Exo) | DNA polymerase nu pseudo-exo | This domain, known as the Pseudo-exo domain, is found DNA polymerase Nu protein in species such as Homo sapiens. Residues 192-416 of Pol nu formed a degenerate 3'-5'-exonuclease domain, which deviates from the equivalent [1]. | Domain | |
PF00476 | DNA polymerase family A (DNA_pol_A) | DNA polymerase family A | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR001098 | DNA-directed DNA polymerase, family A, palm domain | Domain | |
IPR040940 | DNA polymerase nu, pseudo-exo domain | Domain | |
IPR002298 | DNA polymerase A | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q7Z5Q5 | :