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 4XQQ | pdb_00004xqq

Crystal structure of AgrA LytTR domain in complex with promoters

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyChromo domain-like 8092313 3000161 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyChromo domain-like 8092314 3000161 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyChromo domain-like 8092313 3000161 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyChromo domain-like 8092314 3000161 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyChromo domain-like 8092313 3000161 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyChromo domain-like 8092314 3000161 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyChromo domain-like 8092313 3000161 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyChromo domain-like 8092314 3000161 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DBac_rhodopsine4xqqD1 A: alpha arraysX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domainT: Ribosomal protein L31e/gp120 outer domainF: Bac_rhodopsinECOD (v295.2)
CBac_rhodopsine4xqqC1 A: alpha arraysX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domainT: Ribosomal protein L31e/gp120 outer domainF: Bac_rhodopsinECOD (v295.2)
BBac_rhodopsine4xqqB1 A: alpha arraysX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domainT: Ribosomal protein L31e/gp120 outer domainF: Bac_rhodopsinECOD (v295.2)
ABac_rhodopsine4xqqA1 A: alpha arraysX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domainT: Ribosomal protein L31e/gp120 outer domainF: Bac_rhodopsinECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.40.50.1020 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) LytTr DNA-binding domainCATH (4.3.0)
C2.40.50.1020 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) LytTr DNA-binding domainCATH (4.3.0)
B2.40.50.1020 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) LytTr DNA-binding domainCATH (4.3.0)
A2.40.50.1020 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) LytTr DNA-binding domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F, H
DNA (5'-D(*AP*TP*TP*TP*CP*TP*TP*AP*AP*CP*TP*AP*GP*TP*CP*G)-3')---
E, G
DNA (5'-D(*TP*CP*GP*AP*CP*TP*AP*GP*TP*TP*AP*AP*GP*AP*AP*A)-3')---
A, B, C, D
Accessory gene regulator A -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR011006CheY-like superfamilyHomologous Superfamily
A, B, C, D
IPR001789Signal transduction response regulator, receiver domainDomain
A, B, C, D
IPR007492LytTR DNA-binding domainDomain
A, B, C, D
IPR046947Transcriptional regulatory protein LytR-likeFamily