4XKR

Crystal structure of NikA from Staphylococcus aureus in complex with Ni-(L-His)(2-methyl-thiazolidine dicarboxylate) (co-crystallization with Ni(II) and CDdeltaHis medium supernatant)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASBP_bac_5_1ste4xkrA1 A: a+b two layersX: Alpha-beta plaitsH: Oligo-peptide binding protein (OPPA) insertion domain (From Topology)T: Oligo-peptide binding protein (OPPA) insertion domainF: SBP_bac_5_1stECOD (1.6)
ASBP_bac_5_3rde4xkrA2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_5_3rdECOD (1.6)
ASBP_bac_5_2nde4xkrA3 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_5_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00496Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)Bacterial extracellular solute-binding proteins, family 5 MiddleThe borders of this family are based on the PDBSum definitions of the domain edges for Swiss:P06202.Domain