4XAV | pdb_00004xav

Crystal structure of olfactomedin domain from gliomedin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4xavd_	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	OLF domain of olfactomedins	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d4xavc_	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	OLF domain of olfactomedins	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d4xavb_	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	OLF domain of olfactomedins	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d4xava_	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	OLF domain of olfactomedins	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Olfactomedin-like	8052990	3002154	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Olfactomedin-like	8052990	3002154	SCOP2B (2022-06-29)
B	SCOP2 Family	Olfactomedin-like	8049984	4006715	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Olfactomedin-like	8052990	3002154	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Olfactomedin-like	8052990	3002154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e4xavD1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: TAXi_N	F:	ECOD (20:10:01)
C		e4xavC1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: TAXi_N	F:	ECOD (20:10:01)
B		e4xavB1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: TAXi_N	F:	ECOD (20:10:01)
A		e4xavA1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: TAXi_N	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02191	Olfactomedin-like domain (OLF)	Olfactomedin-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Gliomedin	cell adhesion molecule binding protein binding binding cell adhesion mediator activity cell-cell adhesion mediator activity protein binding involved in heterotypic cell-cell adhesion	multicellular organismal process cellular developmental process cell development cellular component organization neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development cellular component organization or biogenesis cell maturation system development membrane organization developmental process multicellular organismal process cellular developmental process cell development cellular component organization neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development cellular component organization or biogenesis cell maturation system development membrane organization developmental process clustering of voltage-gated sodium channels developmental maturation nervous system development neuronal ion channel clustering generation of neurons anatomical structure maturation neuron development cellular process neuron maturation cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation signal transduction cell communication plasma membrane bounded cell projection organization cell projection organization microvillus organization	cell surface cellular anatomical structure protein-containing complex collagen trimer cell periphery plasma membrane membrane axon cell projection neuron projection plasma membrane bounded cell projection extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR008160	Collagen triple helix repeat	Repeat
A, B, C, D	IPR003112	Olfactomedin-like domain	Domain
A, B, C, D	IPR050605	Olfactomedin-like domain-containing protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.