4XAT

Crystal structure of the olfactomedin domain from noelin/pancortin/olfactomedin-1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4xata_	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Olfactomedin-like	8049985	4006715	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Olfactomedin-like	8052991	3002154	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF02191	e4xatA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: PF02191	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02191	Olfactomedin-like domain (OLF)	Olfactomedin-like domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Noelin	-	developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development heart development cellular developmental process heart morphogenesis animal organ development mesenchyme development tissue development circulatory system development epithelial to mesenchymal transition developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development heart development cellular developmental process heart morphogenesis animal organ development mesenchyme development tissue development circulatory system development epithelial to mesenchymal transition anatomical structure morphogenesis cell differentiation cardiac epithelial to mesenchymal transition animal organ morphogenesis cellular process mesenchymal cell differentiation regulation of epithelial to mesenchymal transition regulation of cellular process regulation of developmental process positive regulation of biological process positive regulation of epithelial to mesenchymal transition regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of multicellular organismal process positive regulation of cellular process regulation of biological process biological regulation positive regulation of multicellular organismal process cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of biosynthetic process cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process atrioventricular valve development heart valve development atrioventricular valve formation heart valve morphogenesis anatomical structure formation involved in morphogenesis heart valve formation atrioventricular valve morphogenesis positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death negative regulation of biological process negative regulation of cellular metabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process negative regulation of metabolic process negative regulation of cellular biosynthetic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process neuronal signal transduction cellular response to stimulus response to stimulus signaling signal transduction cell communication axon extension regulation of growth axonogenesis regulation of cellular component size developmental growth cell projection organization neuron projection development cell projection morphogenesis neuron differentiation neuron projection morphogenesis regulation of biological quality developmental growth involved in morphogenesis generation of neurons regulation of cellular component organization plasma membrane bounded cell projection morphogenesis cell development cell growth cell morphogenesis regulation of axon extension cellular component organization neurogenesis regulation of extent of cell growth cellular component organization or biogenesis regulation of cell size neuron projection extension regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation neuron development regulation of anatomical structure size	somatodendritic compartment cell body perikaryon neuronal cell body cellular anatomical entity growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth synapse somatodendritic compartment cell body perikaryon neuronal cell body cellular anatomical entity growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth synapse cell junction extracellular region extracellular space membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011044	Quinoprotein amine dehydrogenase, beta chain-like	Homologous Superfamily
A	IPR022082	Noelin domain	Domain
A	IPR003112	Olfactomedin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q99784	prostate cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer Prostatic Neoplasms spina bifida astrocytic tumor cutaneous lupus erythematosus glioblastoma invasive ductal breast carcinoma malignant colon neoplasm medulloblastoma pancreatic intraductal papillary-mucinous carcinoma Pick disease primitive neuroectodermal tumor psoriasis prostate cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer Prostatic Neoplasms spina bifida astrocytic tumor cutaneous lupus erythematosus glioblastoma invasive ductal breast carcinoma malignant colon neoplasm medulloblastoma pancreatic intraductal papillary-mucinous carcinoma Pick disease primitive neuroectodermal tumor psoriasis subependymal giant cell astrocytoma attention deficit hyperactivity disorder, inattentive type ductal breast carcinoma in situ interstitial cystitis large cell medulloblastoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma rheumatoid arthritis ulcerative colitis atypical teratoid rhabdoid tumor endometriosis interstitial lung disease lung cancer malignant glioma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.