4X9E | pdb_00004x9e

DEOXYGUANOSINETRIPHOSPHATE TRIPHOSPHOHYDROLASE from Escherichia coli with two DNA effector molecules

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	e4x9eA1	A: a+b domain in Capz	X: a+b domain in Capz	H: a+b domain in Capz	T: BSH_RND	F:	ECOD (20:10:01)
B	e4x9eB1	A: a+b domain in Capz	X: a+b domain in Capz	H: a+b domain in Capz	T: BSH_RND	F:	ECOD (20:10:01)
C	e4x9eC1	A: a+b domain in Capz	X: a+b domain in Capz	H: a+b domain in Capz	T: BSH_RND	F:	ECOD (20:10:01)
D	e4x9eD1	A: a+b domain in Capz	X: a+b domain in Capz	H: a+b domain in Capz	T: BSH_RND	F:	ECOD (20:10:01)
E	e4x9eE1	A: a+b domain in Capz	X: a+b domain in Capz	H: a+b domain in Capz	T: BSH_RND	F:	ECOD (20:10:01)
F	e4x9eF1	A: a+b domain in Capz	X: a+b domain in Capz	H: a+b domain in Capz	T: BSH_RND	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	CATH (4.3.0)
B	1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	CATH (4.3.0)
C	1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	CATH (4.3.0)
D	1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	CATH (4.3.0)
E	1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	CATH (4.3.0)
F	1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01966	HD domain (HD)	HD domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H	RNA (5'-R(PCPCP*C)-3')	-	-	-
A, B, C, D, E A, B, C, D, E, F	Deoxyguanosinetriphosphate triphosphohydrolase	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding magnesium ion binding manganese ion binding phosphoric ester hydrolase activity triphosphoric monoester hydrolase activity dGTPase activity hydrolase activity, acting on ester bonds hydrolase activity cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding magnesium ion binding manganese ion binding phosphoric ester hydrolase activity triphosphoric monoester hydrolase activity dGTPase activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides identical protein binding protein binding DNA binding single-stranded DNA binding nucleic acid binding	deoxyribonucleotide catabolic process catabolic process nucleoside triphosphate catabolic process purine nucleoside triphosphate catabolic process purine deoxyribonucleoside triphosphate metabolic process carbohydrate derivative metabolic process organophosphate catabolic process dGTP metabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process deoxyribonucleotide metabolic process purine deoxyribonucleoside triphosphate catabolic process nucleobase-containing small molecule metabolic process deoxyribonucleotide catabolic process catabolic process nucleoside triphosphate catabolic process purine nucleoside triphosphate catabolic process purine deoxyribonucleoside triphosphate metabolic process carbohydrate derivative metabolic process organophosphate catabolic process dGTP metabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process deoxyribonucleotide metabolic process purine deoxyribonucleoside triphosphate catabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process deoxyribonucleoside triphosphate metabolic process nucleoside phosphate metabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process purine deoxyribonucleotide catabolic process carbohydrate derivative catabolic process 2'-deoxyribonucleotide metabolic process primary metabolic process purine-containing compound catabolic process deoxyribonucleoside triphosphate catabolic process nucleotide metabolic process purine-containing compound metabolic process nucleobase-containing compound catabolic process organophosphate metabolic process purine deoxyribonucleotide metabolic process metabolic process cellular process nucleoside triphosphate metabolic process dGTP catabolic process nucleobase-containing small molecule interconversion deoxyribonucleoside metabolic process deoxyribonucleoside biosynthetic process nucleoside biosynthetic process pyrimidine nucleoside metabolic process pyrimidine-containing compound salvage metabolic compound salvage pyrimidine deoxyribonucleoside salvage pyrimidine-containing compound biosynthetic process pyrimidine nucleoside salvage carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process pyrimidine-containing compound metabolic process small molecule biosynthetic process nucleoside salvage nucleobase-containing compound biosynthetic process nucleoside metabolic process nucleobase-containing small molecule biosynthetic process pyrimidine deoxyribonucleoside biosynthetic process biosynthetic process pyrimidine nucleoside biosynthetic process pyrimidine deoxyribonucleoside metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR003607	HD/PDEase domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR020779	dNTP triphosphohydrolase, type 1	Family
A, B, C, D, E A, B, C, D, E, F	IPR006261	dGTP triphosphohydrolase	Family
A, B, C, D, E A, B, C, D, E, F	IPR023293	Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR050135	Deoxyguanosinetriphosphate triphosphohydrolase-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR006674	HD domain	Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A, B	dGTPase M-CSA #966	Deoxyguanosinetriphosphate triphosphohydrolase (dGTPase) is a triphosphohydrolase that has a preference for dGTP over other dNTPs, they hydrolase dGTP to form deoxyguanosine and triphosphate. Escherichia coli dGTPase (Dgt) has been shown to have a strong single-stranded DNA-binding (ssDNA) activity [PMID:25694425] which is thought to act as an allosteric regulator.	Defined by 5 residues: HIS:A-69HIS:A-117ASP:A-118ASP:A-268ARG:B-442 \| Explore in 3D: M-CSA Motif Definition Extent of motif is too large to support Structure Motif searching. EC: 3.1.5.1 (PDB Primary Data)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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