Thermus thermophilus RNA polymerase backtracked complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| J [auth O] | SCOP2B Superfamily | RPB6/omega subunit-like | 8039612 | 3000189 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RPB6/omega subunit-like | 8039612 | 3000189 | SCOP2B (2022-06-29) |
| I [auth N] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039613 | 3001330 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039613 | 3001330 | SCOP2B (2022-06-29) |
| H [auth M] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
| H [auth M] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
| G [auth L] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
| G [auth L] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| G [auth L] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| F [auth K] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| F [auth K] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
| F [auth K] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| J [auth O] | Thymidylat_synt | e4wqsO1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: Thymidylat_synt | ECOD (v294.1) |
| E | e4wqsE1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: | ECOD (v294.1) | |
| I [auth N] | e4wqsN1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: | ECOD (v294.1) | |
| D | TIL | e4wqsD1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Fibronectin type I module-like | T: Fibronectin type I module | F: TIL | ECOD (v294.1) |
| H [auth M] | Thymidylat_synt | e4wqsM1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: Thymidylat_synt | ECOD (v294.1) |
| C | e4wqsC1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: | ECOD (v294.1) | |
| G [auth L] | Thymidylat_synt | e4wqsL1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: Thymidylat_synt | ECOD (v294.1) |
| F [auth K] | Thymidylat_synt | e4wqsK1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: Thymidylat_synt | ECOD (v294.1) |
| B | Thymidylat_synt | e4wqsB1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: Thymidylat_synt | ECOD (v294.1) |
| A | e4wqsA1 | A: a/b three-layered sandwiches | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| E, J [auth O] | PF01192 | RNA polymerase Rpb6 (RNA_pol_Rpb6) | RNA polymerase Rpb6 | - | Family |
| D, I [auth N] | PF00623 | RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) | RNA polymerase Rpb1, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ... | Domain |
| D, I [auth N] | PF05000 | RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) | RNA polymerase Rpb1, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ... | Domain |
| D, I [auth N] | PF04983 | RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) | RNA polymerase Rpb1, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ... | Domain |
| D, I [auth N] | PF04998 | RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) | RNA polymerase Rpb1, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ... | Domain |
| D, I [auth N] | PF04997 | RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) | RNA polymerase Rpb1, domain 1 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp dom ... | Domain |
| C, H [auth M] | PF04561 | RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) | RNA polymerase Rpb2, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ... | Domain |
| C, H [auth M] | PF10385 | RNA polymerase beta subunit external 1 domain (RNA_pol_Rpb2_45) | RNA polymerase beta subunit external 1 domain | RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between ... | Domain |
| C, H [auth M] | PF04560 | RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7) | RNA polymerase Rpb2, domain 7 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ... | Domain |
| C, H [auth M] | PF04565 | RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) | RNA polymerase Rpb2, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ... | Domain |
| C, H [auth M] | PF04563 | RNA polymerase beta subunit (RNA_pol_Rpb2_1) | RNA polymerase beta subunit | - | Family |
| C, H [auth M] | PF00562 | RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) | RNA polymerase Rpb2, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ... | Domain |
| A, B, F [auth K], G [auth L] | PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
| A, B, F [auth K], G [auth L] | PF01000 | RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) | RNA polymerase Rpb3/RpoA insert domain | Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal | Domain |














