4WNF | pdb_00004wnf

Crystal structure of the oxidized TPR domain of LGN in complex with Frmpd4/Preso1 at 2.9 Angstrom resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ATP-synt_VA_C	e4wnfA1	A: a/b three-layered sandwiches	X: Cytidine deaminase-like	H: KorB C-terminal domain	T: KorB C-terminal domain	F: ATP-synt_VA_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13374	Tetratricopeptide repeat (TPR_10)	Tetratricopeptide repeat	-	Repeat
A	PF13176	Tetratricopeptide repeat (TPR_7)	Tetratricopeptide repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	FERM and PDZ domain-containing protein 4	ion binding binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding	regulation of biological process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization regulation of synapse structural plasticity biological regulation positive regulation of biological process cellular component organization regulation of synapse organization cell junction organization positive regulation of synapse structural plasticity cellular process regulation of synapse structure or activity cellular component organization or biogenesis regulation of biological process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization regulation of synapse structural plasticity biological regulation positive regulation of biological process cellular component organization regulation of synapse organization cell junction organization positive regulation of synapse structural plasticity cellular process regulation of synapse structure or activity cellular component organization or biogenesis synapse organization regulation of biological quality positive regulation of cellular process	neuron spine synapse neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse cellular anatomical structure cell junction dendrite dendritic tree protein-containing complex
A	G-protein-signaling modulator 2	protein binding binding protein domain specific binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding GTPase regulator activity enzyme regulator activity GDP-dissociation inhibitor activity nucleoside-triphosphatase regulator activity molecular function regulator activity G-protein alpha-subunit binding identical protein binding protein binding binding protein domain specific binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding GTPase regulator activity enzyme regulator activity GDP-dissociation inhibitor activity nucleoside-triphosphatase regulator activity molecular function regulator activity G-protein alpha-subunit binding identical protein binding protein-containing complex binding dynein complex binding	protein localization to postsynaptic specialization membrane protein localization to postsynaptic membrane protein localization to cell periphery cellular localization protein localization to synapse biological regulation localization within membrane protein localization to membrane protein-containing complex localization neurotransmitter receptor localization to postsynaptic specialization membrane localization regulation of postsynaptic membrane neurotransmitter receptor levels macromolecule localization protein localization to organelle protein localization to postsynaptic specialization membrane protein localization to postsynaptic membrane protein localization to cell periphery cellular localization protein localization to synapse biological regulation localization within membrane protein localization to membrane protein-containing complex localization neurotransmitter receptor localization to postsynaptic specialization membrane localization regulation of postsynaptic membrane neurotransmitter receptor levels macromolecule localization protein localization to organelle cellular process protein localization to postsynapse intracellular protein localization regulation of biological quality protein localization to cell junction receptor localization to synapse cell division positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization microtubule cytoskeleton organization positive regulation of biological process positive regulation of spindle assembly membraneless organelle assembly cellular component organization cellular component biogenesis cellular component assembly positive regulation of cell cycle process cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation positive regulation of cellular process spindle organization cell cycle process regulation of biological process organelle assembly regulation of cell cycle process positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process regulation of spindle organization regulation of cellular component biogenesis spindle assembly regulation of organelle organization positive regulation of cell cycle regulation of spindle assembly organelle organization regulation of organelle assembly microtubule-based process cytoskeleton organization regulation of microtubule cytoskeleton organization positive regulation of organelle assembly regulation of mitotic spindle organization mitotic cell cycle microtubule cytoskeleton organization involved in mitosis mitotic spindle organization mitotic cell cycle process response to light stimulus response to light intensity response to stimulus response to radiation response to abiotic stimulus positive regulation of protein localization to cell periphery regulation of localization regulation of protein localization positive regulation of protein localization to cell cortex regulation of protein localization to cell periphery regulation of protein localization to cell cortex positive regulation of protein localization protein localization to cell cortex establishment of organelle localization spindle localization establishment or maintenance of cell polarity establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell establishment of localization establishment of cell polarity establishment of mitotic spindle orientation maintenance of centrosome location centrosome localization microtubule organizing center localization maintenance of organelle location maintenance of location in cell maintenance of location cellular response to stimulus signaling G protein-coupled receptor signaling pathway signal transduction cell communication	cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle centrosome microtubule organizing center cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytosol cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle centrosome microtubule organizing center cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytosol cell cortex region cytoplasmic region protein-containing complex lateral cell cortex lateral part of cell postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization synapse cell junction asymmetric synapse plasma membrane membrane lateral plasma membrane mitotic spindle spindle mitotic spindle pole spindle pole

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR019749	Band 4.1 domain	Domain
B	IPR000299	FERM domain	Domain
B	IPR035963	FERM superfamily, second domain	Homologous Superfamily
B	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
B	IPR049385	FAK1-like, FERM domain C-lobe	Domain
B	IPR019748	FERM central domain	Domain
B	IPR036034	PDZ superfamily	Homologous Superfamily
B	IPR011993	PH-like domain superfamily	Homologous Superfamily
B	IPR041779	FERM and PDZ domain-containing protein 1/3/4, FERM domain C-lobe	Domain
B	IPR001478	PDZ domain	Domain
B	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B	IPR001202	WW domain	Domain
A	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A	IPR003109	GoLoco motif	Conserved Site
A	IPR019734	Tetratricopeptide repeat	Repeat
A	IPR052386	G-protein-signaling modulator	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q14CM0	intellectual disability, X-linked 104 intellectual disability astrocytic tumor glioblastoma large cell medulloblastoma malignant glioma Mental Retardation, X-Linked 1 osteosarcoma psoriasis atypical teratoid rhabdoid tumor lung carcinoma malignant mesothelioma non-syndromic X-linked intellectual disability pilocytic astrocytoma malignant ependymoma intellectual disability, X-linked 104 intellectual disability astrocytic tumor glioblastoma large cell medulloblastoma malignant glioma Mental Retardation, X-Linked 1 osteosarcoma psoriasis atypical teratoid rhabdoid tumor lung carcinoma malignant mesothelioma non-syndromic X-linked intellectual disability pilocytic astrocytoma malignant ependymoma medulloblastoma oligodendroglioma primitive neuroectodermal tumor
A	Pharos: P81274	Chudley-McCullough syndrome osteosarcoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer Becker muscular dystrophy cystic fibrosis esophageal adenocarcinoma hydrocephalus juvenile dermatomyositis Malformations of Cortical Development non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia spina bifida breast cancer Chudley-McCullough syndrome osteosarcoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer Becker muscular dystrophy cystic fibrosis esophageal adenocarcinoma hydrocephalus juvenile dermatomyositis Malformations of Cortical Development non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia spina bifida breast cancer diabetes mellitus facioscapulohumeral muscular dystrophy intellectual disability limb-girdle muscular dystrophy malignant ependymoma nonsyndromic genetic deafness pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma Duchenne muscular dystrophy glioblastoma interstitial cystitis lung carcinoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.