4WD9 | pdb_00004wd9

Crystal structure of tRNA-dependent lantibiotic dehydratase NisB in complex with NisA leader peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Lant_dehydr_N_like	e4wd9B6	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Lant_dehydr_N_like	ECOD (1.6)
B	Lant_dehydr_C_C	e4wd9B4	A: alpha bundles	X: NisB C-terminal helical domain (From Topology)	H: NisB C-terminal helical domain (From Topology)	T: NisB C-terminal helical domain	F: Lant_dehydr_C_C	ECOD (1.6)
B	Lant_dehydr_C_N	e4wd9B5	A: a+b two layers	X: Alpha-beta plaits	H: Alpha-beta plait domain in NisB (From Topology)	T: Alpha-beta plait domain in NisB	F: Lant_dehydr_C_N	ECOD (1.6)
B	Lant_dehydr_N_2nd	e4wd9B3	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: Lant_dehydr_N_2nd	ECOD (1.6)
B	Lant_dehydr_N_3rd	e4wd9B1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: Lant_dehydr_N_3rd	ECOD (1.6)
A	Lant_dehydr_N_like	e4wd9A1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Lant_dehydr_N_like	ECOD (1.6)
A	Lant_dehydr_C_C	e4wd9A5	A: alpha bundles	X: NisB C-terminal helical domain (From Topology)	H: NisB C-terminal helical domain (From Topology)	T: NisB C-terminal helical domain	F: Lant_dehydr_C_C	ECOD (1.6)
A	Lant_dehydr_C_N	e4wd9A4	A: a+b two layers	X: Alpha-beta plaits	H: Alpha-beta plait domain in NisB (From Topology)	T: Alpha-beta plait domain in NisB	F: Lant_dehydr_C_N	ECOD (1.6)
A	Lant_dehydr_N_2nd	e4wd9A2	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: Lant_dehydr_N_2nd	ECOD (1.6)
A	Lant_dehydr_N_3rd	e4wd9A3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: Lant_dehydr_N_3rd	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Nisin biosynthesis protein NisB	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR006827	Lantibiotic dehydratase, N-terminal	Domain
A, B	IPR023809	Thiopeptide-type bacteriocin biosynthesis domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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