70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| JB [auth CB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063836 | 3001397 | SCOP2B (2022-06-29) |
| A [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063836 | 3001397 | SCOP2B (2022-06-29) |
| RB [auth CJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8098850 | 3001336 | SCOP2B (2022-06-29) |
| I [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8098850 | 3001336 | SCOP2B (2022-06-29) |
| QB [auth CI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8093728 | 3000100 | SCOP2B (2022-06-29) |
| H [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8093728 | 3000100 | SCOP2B (2022-06-29) |
| PB [auth CH] | SCOP2B Superfamily | Ribosomal protein S8 | 8098860 | 3000709 | SCOP2B (2022-06-29) |
| G [auth AH] | SCOP2B Superfamily | Ribosomal protein S8 | 8098860 | 3000709 | SCOP2B (2022-06-29) |
| OB [auth CG] | SCOP2B Superfamily | Ribosomal protein S7 | 8093626 | 3000799 | SCOP2B (2022-06-29) |
| F [auth AG] | SCOP2B Superfamily | Ribosomal protein S7 | 8093626 | 3000799 | SCOP2B (2022-06-29) |
| KD [auth De] | SCOP2B Superfamily | ClpS-like | 8099888 | 3000936 | SCOP2B (2022-06-29) |
| BB [auth Be] | SCOP2B Superfamily | ClpS-like | 8099888 | 3000936 | SCOP2B (2022-06-29) |
| JD [auth D9] | SCOP2B Superfamily | Ribosomal protein L36 | 8093658 | 3001346 | SCOP2B (2022-06-29) |
| AB [auth B9] | SCOP2B Superfamily | Ribosomal protein L36 | 8093658 | 3001346 | SCOP2B (2022-06-29) |
| ZA [auth B8] | SCOP2B Superfamily | L35p-like | 8099912 | 3000790 | SCOP2B (2022-06-29) |
| ID [auth D8] | SCOP2B Superfamily | L35p-like | 8099912 | 3000790 | SCOP2B (2022-06-29) |
| XA [auth B6] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099892 | 3001320 | SCOP2B (2022-06-29) |
| GD [auth D6] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099892 | 3001320 | SCOP2B (2022-06-29) |
| NB [auth CF] | SCOP2B Superfamily | Ribosomal protein S6 | 8098858 | 3001323 | SCOP2B (2022-06-29) |
| E [auth AF] | SCOP2B Superfamily | Ribosomal protein S6 | 8098858 | 3001323 | SCOP2B (2022-06-29) |
| WA [auth B5] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8081579 | 3001320 | SCOP2B (2022-06-29) |
| FD [auth D5] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8081579 | 3001320 | SCOP2B (2022-06-29) |
| VA [auth B3] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8099900 | 3001378 | SCOP2B (2022-06-29) |
| ED [auth D3] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8099900 | 3001378 | SCOP2B (2022-06-29) |
| UA [auth B2] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8076744 | 3000713 | SCOP2B (2022-06-29) |
| DD [auth D2] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8076744 | 3000713 | SCOP2B (2022-06-29) |
| ZC [auth DX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8099896 | 3000210 | SCOP2B (2022-06-29) |
| QA [auth BX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8099896 | 3000210 | SCOP2B (2022-06-29) |
| YC [auth DW] | SCOP2B Superfamily | Ribosomal protein L22 | 8099898 | 3001078 | SCOP2B (2022-06-29) |
| PA [auth BW] | SCOP2B Superfamily | Ribosomal protein L22 | 8099898 | 3001078 | SCOP2B (2022-06-29) |
| XC [auth DV] | SCOP2B Superfamily | l21p-like | 8093656 | 3002005 | SCOP2B (2022-06-29) |
| OA [auth BV] | SCOP2B Superfamily | l21p-like | 8093656 | 3002005 | SCOP2B (2022-06-29) |
| WC [auth DU] | SCOP2B Superfamily | Ribosomal protein L20 | 8093660 | 3000563 | SCOP2B (2022-06-29) |
| NA [auth BU] | SCOP2B Superfamily | Ribosomal protein L20 | 8093660 | 3000563 | SCOP2B (2022-06-29) |
| UC [auth DS] | SCOP2B Superfamily | Translational machinery components | 8074014 | 3000571 | SCOP2B (2022-06-29) |
| LA [auth BS] | SCOP2B Superfamily | Translational machinery components | 8074014 | 3000571 | SCOP2B (2022-06-29) |
| RC [auth DP] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099902 | 3001045 | SCOP2B (2022-06-29) |
| IA [auth BP] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099902 | 3001045 | SCOP2B (2022-06-29) |
| QC [auth DO] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8093738 | 3000433 | SCOP2B (2022-06-29) |
| HA [auth BO] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8093738 | 3000433 | SCOP2B (2022-06-29) |
| PC [auth DN] | SCOP2B Superfamily | Ribosomal protein L13 | 8099906 | 3001134 | SCOP2B (2022-06-29) |
| GA [auth BN] | SCOP2B Superfamily | Ribosomal protein L13 | 8099906 | 3001134 | SCOP2B (2022-06-29) |
| LB [auth CD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8093624 | 3001473 | SCOP2B (2022-06-29) |
| C [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8093624 | 3001473 | SCOP2B (2022-06-29) |
| JC [auth DE] | SCOP2B Superfamily | Translational proteins | 8089140 | 3000811 | SCOP2B (2022-06-29) |
| AA [auth BE] | SCOP2B Superfamily | Translational proteins | 8089140 | 3000811 | SCOP2B (2022-06-29) |
| Y [auth BC] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8099890 | 3001911 | SCOP2B (2022-06-29) |
| HC [auth DC] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8099890 | 3001911 | SCOP2B (2022-06-29) |
| S [auth AT] | SCOP2B Superfamily | Ribosomal protein S20 | 8101559 | 3001362 | SCOP2B (2022-06-29) |
| BC [auth CT] | SCOP2B Superfamily | Ribosomal protein S20 | 8101559 | 3001362 | SCOP2B (2022-06-29) |
| R [auth AS] | SCOP2B Superfamily | Ribosomal protein S19 | 8098856 | 3000686 | SCOP2B (2022-06-29) |
| AC [auth CS] | SCOP2B Superfamily | Ribosomal protein S19 | 8098856 | 3000686 | SCOP2B (2022-06-29) |
| VB [auth CN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052583 | 3000068 | SCOP2B (2022-06-29) |
| M [auth AN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052583 | 3000068 | SCOP2B (2022-06-29) |
| UB [auth CM] | SCOP2B Superfamily | S13-like H2TH domain | 8098854 | 3000053 | SCOP2B (2022-06-29) |
| L [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8098854 | 3000053 | SCOP2B (2022-06-29) |
| TB [auth CL] | SCOP2 Family | Cold shock DNA-binding domain-like | 8098823 | 4001909 | SCOP2 (2022-06-29) |
| TB [auth CL] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8098824 | 3000135 | SCOP2 (2022-06-29) |
| K [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8098824 | 3000135 | SCOP2B (2022-06-29) |
| SB [auth CK] | SCOP2B Superfamily | Translational machinery components | 8098852 | 3000571 | SCOP2B (2022-06-29) |
| J [auth AK] | SCOP2B Superfamily | Translational machinery components | 8098852 | 3000571 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| JB [auth CB] | Ribosomal_S2 | e4v9lCB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
| A [auth AB] | Ribosomal_S2 | e4v9lAB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
| RB [auth CJ] | Ribosomal_S10 | e4v9lCJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
| I [auth AJ] | Ribosomal_S10 | e4v9lAJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
| QB [auth CI] | Ribosomal_S9 | e4v9lCI1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
| H [auth AI] | Ribosomal_S9 | e4v9lAI1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
| PB [auth CH] | Ribosomal_S8_N | e4v9lCH1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
| PB [auth CH] | Ribosomal_S8_C | e4v9lCH2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
| G [auth AH] | Ribosomal_S8_N | e4v9lAH1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
| G [auth AH] | Ribosomal_S8_C | e4v9lAH2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
| OB [auth CG] | Ribosomal_S7_1 | e4v9lCG1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
| F [auth AG] | Ribosomal_S7_1 | e4v9lAG1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
| PD [auth D4] | Ribosomal_L31 | e4v9lD41 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: Ribosomal_L31 | ECOD (1.6) |
| GB [auth B4] | Ribosomal_L31 | e4v9lB41 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: Ribosomal_L31 | ECOD (1.6) |
| OD [auth D1] | Ribosomal_L28 | e4v9lD11 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| FB [auth B1] | Ribosomal_L28 | e4v9lB11 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| KD [auth De] | Ribosomal_L12 | e4v9lDe1 | A: a+b two layers | X: ClpS-like | H: ClpS-related (From Topology) | T: ClpS-related | F: Ribosomal_L12 | ECOD (1.6) |
| BB [auth Be] | Ribosomal_L12 | e4v9lBe1 | A: a+b two layers | X: ClpS-like | H: ClpS-related (From Topology) | T: ClpS-related | F: Ribosomal_L12 | ECOD (1.6) |
| JD [auth D9] | Ribosomal_L36 | e4v9lD91 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
| AB [auth B9] | Ribosomal_L36 | e4v9lB91 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
| ZA [auth B8] | Ribosomal_L35p | e4v9lB81 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| ID [auth D8] | Ribosomal_L35p | e4v9lD81 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| YA [auth B7] | Ribosomal_L34 | e4v9lB71 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| HD [auth D7] | Ribosomal_L34 | e4v9lD71 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| XA [auth B6] | Ribosomal_L33 | e4v9lB61 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
| GD [auth D6] | Ribosomal_L33 | e4v9lD61 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
| NB [auth CF] | Ribosomal_S6 | e4v9lCF1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
| E [auth AF] | Ribosomal_S6 | e4v9lAF1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
| WA [auth B5] | Ribosomal_L32p | e4v9lB51 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| FD [auth D5] | Ribosomal_L32p | e4v9lD51 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| VA [auth B3] | Ribosomal_L30 | e4v9lB31 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| ED [auth D3] | Ribosomal_L30 | e4v9lD31 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| UA [auth B2] | Ribosomal_L29 | e4v9lB21 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| DD [auth D2] | Ribosomal_L29 | e4v9lD21 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| TA [auth B0] | Ribosomal_L27 | e4v9lB01 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| CD [auth D0] | Ribosomal_L27 | e4v9lD01 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| SA [auth BZ] | Ribosomal_L25p | e4v9lBZ2 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| SA [auth BZ] | Ribosomal_TL5_C | e4v9lBZ1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: Ribosomal_TL5_C | ECOD (1.6) |
| BD [auth DZ] | Ribosomal_L25p | e4v9lDZ2 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| BD [auth DZ] | Ribosomal_TL5_C | e4v9lDZ1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: Ribosomal_TL5_C | ECOD (1.6) |
| RA [auth BY] | ribosomal_L24 | e4v9lBY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24 | ECOD (1.6) |
| AD [auth DY] | ribosomal_L24 | e4v9lDY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24 | ECOD (1.6) |
| ZC [auth DX] | Ribosomal_L23_2 | e4v9lDX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| QA [auth BX] | Ribosomal_L23_2 | e4v9lBX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| YC [auth DW] | Ribosomal_L22 | e4v9lDW1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| PA [auth BW] | Ribosomal_L22 | e4v9lBW1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| XC [auth DV] | Ribosomal_L21p | e4v9lDV1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| OA [auth BV] | Ribosomal_L21p | e4v9lBV1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| WC [auth DU] | Ribosomal_L20 | e4v9lDU1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| NA [auth BU] | Ribosomal_L20 | e4v9lBU1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| MB [auth CE] | Ribosomal_S5_C | e4v9lCE2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
| MB [auth CE] | Ribosomal_S5 | e4v9lCE1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
| D [auth AE] | Ribosomal_S5_C | e4v9lAE2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
| D [auth AE] | Ribosomal_S5 | e4v9lAE1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
| VC [auth DT] | Ribosomal_L19 | e4v9lDT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| MA [auth BT] | Ribosomal_L19 | e4v9lBT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| UC [auth DS] | Ribosomal_L18p | e4v9lDS1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| LA [auth BS] | Ribosomal_L18p | e4v9lBS1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| TC [auth DR] | Ribosomal_L17_1 | e4v9lDR1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
| KA [auth BR] | Ribosomal_L17_1 | e4v9lBR1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
| SC [auth DQ] | Ribosomal_L16 | e4v9lDQ1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| JA [auth BQ] | Ribosomal_L16 | e4v9lBQ1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| RC [auth DP] | Ribosomal_L27A | e4v9lDP1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| IA [auth BP] | Ribosomal_L27A | e4v9lBP1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| QC [auth DO] | Ribosomal_L14 | e4v9lDO1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| HA [auth BO] | Ribosomal_L14 | e4v9lBO1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| PC [auth DN] | Ribosomal_L13 | e4v9lDN1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| GA [auth BN] | Ribosomal_L13 | e4v9lBN1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| OC [auth DK] | Ribosomal_L11 | e4v9lDK2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
| OC [auth DK] | Ribosomal_L11_N | e4v9lDK1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
| FA [auth BK] | Ribosomal_L11 | e4v9lBK2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
| FA [auth BK] | Ribosomal_L11_N | e4v9lBK1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
| MC [auth DH] | Ribosomal_L6 | e4v9lDH2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| MC [auth DH] | Ribosomal_L6_1 | e4v9lDH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
| DA [auth BH] | Ribosomal_L6 | e4v9lBH2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| DA [auth BH] | Ribosomal_L6_1 | e4v9lBH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
| LB [auth CD] | S4 | e4v9lCD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
| C [auth AD] | S4 | e4v9lAD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
| LC [auth DG] | Ribosomal_L5_C | e4v9lDG1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
| CA [auth BG] | Ribosomal_L5_C | e4v9lBG1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
| KC [auth DF] | Ribosomal_L4 | e4v9lDF1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| BA [auth BF] | Ribosomal_L4 | e4v9lBF1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| JC [auth DE] | Ribosomal_L3 | e4v9lDE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| AA [auth BE] | Ribosomal_L3 | e4v9lBE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| Z [auth BD] | Ribosomal_L2_1 | e4v9lBD2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| Z [auth BD] | Ribosomal_L2_C | e4v9lBD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
| IC [auth DD] | Ribosomal_L2_1 | e4v9lDD2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| IC [auth DD] | Ribosomal_L2_C | e4v9lDD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
| Y [auth BC] | Ribosomal_L1_2nd_1 | e4v9lBC1 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
| Y [auth BC] | Ribosomal_L1_1st | e4v9lBC2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st | ECOD (1.6) |
| HC [auth DC] | Ribosomal_L1_2nd_1 | e4v9lDC1 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
| HC [auth DC] | Ribosomal_L1_1st | e4v9lDC2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st | ECOD (1.6) |
| W [auth AY] | GTP_EFTU_D2 | e4v9lAY5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
| W [auth AY] | EFG_IV | e4v9lAY4 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: EFG_IV | ECOD (1.6) |
| W [auth AY] | EFG_C | e4v9lAY2 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_C | ECOD (1.6) |
| W [auth AY] | EFG_II | e4v9lAY1 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_II | ECOD (1.6) |
| W [auth AY] | MnmE_helical_2nd | e4v9lAY3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
| FC [auth CY] | GTP_EFTU_D2 | e4v9lCY5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
| FC [auth CY] | EFG_IV | e4v9lCY4 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: EFG_IV | ECOD (1.6) |
| FC [auth CY] | EFG_C | e4v9lCY2 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_C | ECOD (1.6) |
| FC [auth CY] | EFG_II | e4v9lCY1 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_II | ECOD (1.6) |
| FC [auth CY] | MnmE_helical_2nd | e4v9lCY3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
| KB [auth CC] | Ribosomal_S3_C | e4v9lCC1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
| KB [auth CC] | KH_2_1 | e4v9lCC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
| B [auth AC] | Ribosomal_S3_C | e4v9lAC1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
| B [auth AC] | KH_2_1 | e4v9lAC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
| S [auth AT] | Ribosomal_S20p | e4v9lAT1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
| BC [auth CT] | Ribosomal_S20p | e4v9lCT1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
| R [auth AS] | Ribosomal_S19 | e4v9lAS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
| AC [auth CS] | Ribosomal_S19 | e4v9lCS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
| Q [auth AR] | Ribosomal_S18 | e4v9lAR1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
| ZB [auth CR] | Ribosomal_S18 | e4v9lCR1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
| YB [auth CQ] | Ribosomal_S17_1 | e4v9lCQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| P [auth AQ] | Ribosomal_S17_1 | e4v9lAQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| XB [auth CP] | Ribosomal_S16_1 | e4v9lCP1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
| O [auth AP] | Ribosomal_S16_1 | e4v9lAP1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
| WB [auth CO] | Ribosomal_S15_1 | e4v9lCO1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
| N [auth AO] | Ribosomal_S15_1 | e4v9lAO1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
| VB [auth CN] | Ribosomal_S14 | e4v9lCN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14 | ECOD (1.6) |
| M [auth AN] | Ribosomal_S14 | e4v9lAN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14 | ECOD (1.6) |
| UB [auth CM] | Ribosomal_S13_1 | e4v9lCM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
| L [auth AM] | Ribosomal_S13_1 | e4v9lAM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
| TB [auth CL] | Ribosom_S12_S23 | e4v9lCL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| K [auth AL] | Ribosom_S12_S23 | e4v9lAL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| SB [auth CK] | Ribosomal_S11 | e4v9lCK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
| J [auth AK] | Ribosomal_S11 | e4v9lAK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| HD [auth D7], YA [auth B7] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| CA [auth BG], LC [auth DG] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| CA [auth BG], LC [auth DG] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| FC [auth CY], W [auth AY] | PF00679 | Elongation factor G C-terminus (EFG_C) | Elongation factor G C-terminus | This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. | Domain |
| FC [auth CY], W [auth AY] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| FC [auth CY], W [auth AY] | PF14492 | Elongation Factor G, domain III (EFG_III) | Elongation Factor G, domain III | This domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. | Domain |
| FC [auth CY], W [auth AY] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
| FC [auth CY], W [auth AY] | PF03764 | Elongation factor G, domain IV (EFG_IV) | Elongation factor G, domain IV | This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. | Domain |














