4V5V | pdb_00004v5v

Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth BD]	TTL, ATPgrasp_YheCD	e4v5vBD1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
Y [auth BC]	TTL, ATPgrasp_YheCD	e4v5vBC1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
X [auth BB]	TTL, ATPgrasp_YheCD	e4v5vBB1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
W [auth BA]	TTL, ATPgrasp_YheCD	e4v5vBA1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
V [auth AV]	TTL, ATPgrasp_YheCD	e4v5vAV1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
U [auth AU]	TTL, ATPgrasp_YheCD	e4v5vAU1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
T [auth AT]	TTL, ATPgrasp_YheCD	e4v5vAT1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
S [auth AS]	TTL, ATPgrasp_YheCD	e4v5vAS1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
RA [auth BZ]	TTL, ATPgrasp_YheCD	e4v5vBZ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
R [auth AR]	TTL, ATPgrasp_YheCD	e4v5vAR1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
QA [auth BY]	TTL, ATPgrasp_YheCD	e4v5vBY1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
Q [auth AQ]	TTL, ATPgrasp_YheCD	e4v5vAQ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
P [auth AP]	TTL, ATPgrasp_YheCD	e4v5vAP1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
OA [auth BW]	TTL, ATPgrasp_YheCD	e4v5vBW1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
O [auth AO]	TTL, ATPgrasp_YheCD	e4v5vAO1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
N [auth AN]	TTL, ATPgrasp_YheCD	e4v5vAN1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
MA [auth BQ]	TTL, ATPgrasp_YheCD	e4v5vBQ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
LA [auth BP]	TTL, ATPgrasp_YheCD	e4v5vBP1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
L [auth AL]	TTL, ATPgrasp_YheCD	e4v5vAL1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
KA [auth BO]	TTL, ATPgrasp_YheCD	e4v5vBO1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
JA [auth BN]	TTL, ATPgrasp_YheCD	e4v5vBN1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
J [auth AJ]	TTL, ATPgrasp_YheCD	e4v5vAJ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
IA [auth BM]	TTL, ATPgrasp_YheCD	e4v5vBM1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
I [auth AI]	TTL, ATPgrasp_YheCD	e4v5vAI1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
HA [auth BL]	TTL, ATPgrasp_YheCD	e4v5vBL1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
H [auth AH]	TTL, ATPgrasp_YheCD	e4v5vAH1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
GA [auth BK]	TTL, ATPgrasp_YheCD	e4v5vBK1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
G [auth AG]	TTL, ATPgrasp_YheCD	e4v5vAG1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
FA [auth BJ]	TTL, ATPgrasp_YheCD	e4v5vBJ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
F [auth AF]	TTL, ATPgrasp_YheCD	e4v5vAF1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
EA [auth BI]	TTL, ATPgrasp_YheCD	e4v5vBI1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
E [auth AE]	TTL, ATPgrasp_YheCD	e4v5vAE1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
DA [auth BH]	TTL, ATPgrasp_YheCD	e4v5vBH1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
D [auth AD]	TTL, ATPgrasp_YheCD	e4v5vAD1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
CA [auth BG]	TTL, ATPgrasp_YheCD	e4v5vBG1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
C [auth AC]	TTL, ATPgrasp_YheCD	e4v5vAC1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
BA [auth BF]	TTL, ATPgrasp_YheCD	e4v5vBF1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
B [auth AB]	TTL, ATPgrasp_YheCD	e4v5vAB1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
AA [auth BE]	TTL, ATPgrasp_YheCD	e4v5vBE1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
A [auth AA]	TTL, ATPgrasp_YheCD	e4v5vAA1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth AK], M [auth AM], NA [auth BR], PA [auth BX]	RNA	-	-	-
A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], CA [auth BG], D [auth AD], DA [auth BH], E [auth AE], EA [auth BI], F [auth AF], FA [auth BJ], G [auth AG], GA [auth BK], H [auth AH], HA [auth BL], I [auth AI], IA [auth BM], J [auth AJ], JA [auth BN], KA [auth BO], L [auth AL], LA [auth BP], MA [auth BQ], N [auth AN], O [auth AO], OA [auth BW], P [auth AP], Q [auth AQ], QA [auth BY], R [auth AR], RA [auth BZ], S [auth AS], T [auth AT], U [auth AU], V [auth AV], W [auth BA], X [auth BB], Y [auth BC], Z [auth BD]	RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN	enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity RNA binding binding nucleic acid binding	symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway response to stimulus response to other organism symbiont-mediated perturbation of host defenses symbiont-mediated suppression of host PKR/eIFalpha signaling symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus symbiont-mediated suppression of host-directed shutoff of host translation symbiont-mediated suppression of host defenses response to host response to external biotic stimulus symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MDA-5 activity symbiont-mediated perturbation of host NF-kappaB cascade symbiont-mediated suppression of host NF-kappaB cascade	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], CA [auth BG], D [auth AD], DA [auth BH], E [auth AE], EA [auth BI], F [auth AF], FA [auth BJ], G [auth AG], GA [auth BK], H [auth AH], HA [auth BL], I [auth AI], IA [auth BM], J [auth AJ], JA [auth BN], KA [auth BO], L [auth AL], LA [auth BP], MA [auth BQ], N [auth AN], O [auth AO], OA [auth BW], P [auth AP], Q [auth AQ], QA [auth BY], R [auth AR], RA [auth BZ], S [auth AS], T [auth AT], U [auth AU], V [auth AV], W [auth BA], X [auth BB], Y [auth BC], Z [auth BD]	IPR004930	Pneumovirus nucleocapsid protein	Family