4V5T | pdb_00004v5t

X-ray structure of the Grapevine Fanleaf virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth CL]	Ribosomal_L1	e4v5tCL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Z [auth BF]	Ribosomal_L1	e4v5tBF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
YA [auth CK]	Ribosomal_L1	e4v5tCK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Y [auth BE]	Ribosomal_L1	e4v5tBE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
XA [auth CJ]	Ribosomal_L1	e4v5tCJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
X [auth BD]	Ribosomal_L1	e4v5tBD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
WA [auth CI]	Ribosomal_L1	e4v5tCI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
W [auth BC]	Ribosomal_L1	e4v5tBC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
VA [auth CH]	Ribosomal_L1	e4v5tCH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
V [auth BB]	Ribosomal_L1	e4v5tBB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
UA [auth CG]	Ribosomal_L1	e4v5tCG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
U [auth BA]	Ribosomal_L1	e4v5tBA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
TA [auth CF]	Ribosomal_L1	e4v5tCF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
T [auth AT]	Ribosomal_L1	e4v5tAT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
SA [auth CE]	Ribosomal_L1	e4v5tCE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
S [auth AS]	Ribosomal_L1	e4v5tAS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
RA [auth CD]	Ribosomal_L1	e4v5tCD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
R [auth AR]	Ribosomal_L1	e4v5tAR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
QA [auth CC]	Ribosomal_L1	e4v5tCC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Q [auth AQ]	Ribosomal_L1	e4v5tAQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
PA [auth CB]	Ribosomal_L1	e4v5tCB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
P [auth AP]	Ribosomal_L1	e4v5tAP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
OA [auth CA]	Ribosomal_L1	e4v5tCA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
O [auth AO]	Ribosomal_L1	e4v5tAO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
NA [auth BT]	Ribosomal_L1	e4v5tBT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
N [auth AN]	Ribosomal_L1	e4v5tAN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
MA [auth BS]	Ribosomal_L1	e4v5tBS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
M [auth AM]	Ribosomal_L1	e4v5tAM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
LA [auth BR]	Ribosomal_L1	e4v5tBR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
L [auth AL]	Ribosomal_L1	e4v5tAL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
KA [auth BQ]	Ribosomal_L1	e4v5tBQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
K [auth AK]	Ribosomal_L1	e4v5tAK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
JA [auth BP]	Ribosomal_L1	e4v5tBP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
J [auth AJ]	Ribosomal_L1	e4v5tAJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
IA [auth BO]	Ribosomal_L1	e4v5tBO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
I [auth AI]	Ribosomal_L1	e4v5tAI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
HB [auth CT]	Ribosomal_L1	e4v5tCT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
HA [auth BN]	Ribosomal_L1	e4v5tBN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
H [auth AH]	Ribosomal_L1	e4v5tAH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
GB [auth CS]	Ribosomal_L1	e4v5tCS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
GA [auth BM]	Ribosomal_L1	e4v5tBM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
G [auth AG]	Ribosomal_L1	e4v5tAG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
FB [auth CR]	Ribosomal_L1	e4v5tCR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
FA [auth BL]	Ribosomal_L1	e4v5tBL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
F [auth AF]	Ribosomal_L1	e4v5tAF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
EB [auth CQ]	Ribosomal_L1	e4v5tCQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
EA [auth BK]	Ribosomal_L1	e4v5tBK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
E [auth AE]	Ribosomal_L1	e4v5tAE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
DB [auth CP]	Ribosomal_L1	e4v5tCP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
DA [auth BJ]	Ribosomal_L1	e4v5tBJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
D [auth AD]	Ribosomal_L1	e4v5tAD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
CB [auth CO]	Ribosomal_L1	e4v5tCO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
CA [auth BI]	Ribosomal_L1	e4v5tBI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
C [auth AC]	Ribosomal_L1	e4v5tAC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
BB [auth CN]	Ribosomal_L1	e4v5tCN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
BA [auth BH]	Ribosomal_L1	e4v5tBH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
B [auth AB]	Ribosomal_L1	e4v5tAB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
AB [auth CM]	Ribosomal_L1	e4v5tCM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
AA [auth BG]	Ribosomal_L1	e4v5tBG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
A [auth AA]	Ribosomal_L1	e4v5tAA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	COAT PROTEIN	structural molecule activity	transport of virus in host, cell to cell transport of virus in multicellular host biological process involved in interspecies interaction between organisms migration in host viral process transport of virus biological process involved in interaction with host biological process involved in symbiotic interaction	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm host cell plasmodesma host cell plasma membrane viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm host cell plasmodesma host cell plasma membrane host cell junction host cell membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR021081	Nepovirus subgroup A, RNA2 polyprotein, Protein 2A	Domain
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR005306	Nepovirus coat protein, N-terminal	Domain
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR005305	Nepovirus coat protein, C-terminal	Domain
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR005054	Nepovirus coat protein	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.