Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| G [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| I [auth AF] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| K [auth AH] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| L [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| M [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| N [auth AK] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| O [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| P [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| R [auth AO] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| S [auth AP] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| T [auth AQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| V [auth AS] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| Z [auth B2] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8065348 | 3001911 | SCOP2B (2022-06-29) |
| AA [auth B3] | SCOP2 Family | Ribosomal protein L7/12, oligomerisation (N-terminal) domain | 8029722 | 4001215 | SCOP2 (2022-06-29) |
| AA [auth B3] | SCOP2 Superfamily | Ribosomal protein L7/12, oligomerisation (N-terminal) domain | 8042101 | 3001092 | SCOP2 (2022-06-29) |
| BA [auth B5] | SCOP2B Superfamily | Ribosomal protein L7/12, oligomerisation (N-terminal) domain | 8042101 | 3001092 | SCOP2B (2022-06-29) |
| CA [auth BA] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| CA [auth BA] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| DA [auth BB] | SCOP2 Family | Ribosomal protein L3 | 8020575 | 4002103 | SCOP2 (2022-06-29) |
| DA [auth BB] | SCOP2 Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2 (2022-06-29) |
| EA [auth BC] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| FA [auth BD] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| GA [auth BE] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| GA [auth BE] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| HA [auth BF] | SCOP2 Family | Ribosomal protein L9 C-domain | 8020578 | 4001748 | SCOP2 (2022-06-29) |
| HA [auth BF] | SCOP2 Family | Ribosomal protein L9 N-domain | 8020580 | 4001757 | SCOP2 (2022-06-29) |
| HA [auth BF] | SCOP2 Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2 (2022-06-29) |
| HA [auth BF] | SCOP2 Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2 (2022-06-29) |
| IA [auth BG] | SCOP2 Family | Ribosomal protein L11, C-terminal domain | 8020581 | 4000731 | SCOP2 (2022-06-29) |
| IA [auth BG] | SCOP2 Family | Ribosomal L11/L12e N-terminal domain-like | 8020583 | 4001161 | SCOP2 (2022-06-29) |
| IA [auth BG] | SCOP2 Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2 (2022-06-29) |
| IA [auth BG] | SCOP2 Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2 (2022-06-29) |
| JA [auth BH] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| KA [auth BI] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| LA [auth BJ] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| MA [auth BK] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| NA [auth BL] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| OA [auth BM] | SCOP2 Family | Ribosomal protein L18p and S11 | 8020589 | 4000555 | SCOP2 (2022-06-29) |
| OA [auth BM] | SCOP2 Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2 (2022-06-29) |
| PA [auth BN] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| QA [auth BO] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| RA [auth BQ] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| SA [auth BR] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| TA [auth BS] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| UA [auth BT] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| VA [auth BU] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| WA [auth BW] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| XA [auth BX] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| ZA [auth B1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth AB] | FlaF_Ig-like | e4v4wAB1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.1) |
| F [auth AC] | TTL, ATPgrasp_YheCD | e4v4wAC1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| G [auth AD] | FlaF_Ig-like | e4v4wAD1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.1) |
| H [auth AE] | TTL, ATPgrasp_YheCD | e4v4wAE1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| I [auth AF] | TTL, ATPgrasp_YheCD | e4v4wAF1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| J [auth AG] | TTL, ATPgrasp_YheCD | e4v4wAG1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| K [auth AH] | TTL, ATPgrasp_YheCD | e4v4wAH1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| L [auth AI] | FlaF_Ig-like | e4v4wAI1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.1) |
| M [auth AJ] | TTL, ATPgrasp_YheCD | e4v4wAJ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| N [auth AK] | TTL, ATPgrasp_YheCD | e4v4wAK1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| O [auth AL] | TTL, ATPgrasp_YheCD | e4v4wAL1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| P [auth AM] | Cellulase | e4v4wAM1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.1) |
| Q [auth AN] | TTL, ATPgrasp_YheCD | e4v4wAN1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| R [auth AO] | TTL, ATPgrasp_YheCD | e4v4wAO1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| S [auth AP] | TTL, ATPgrasp_YheCD | e4v4wAP1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| T [auth AQ] | Cellulase | e4v4wAQ1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.1) |
| U [auth AR] | TTL, ATPgrasp_YheCD | e4v4wAR1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| V [auth AS] | Cellulase | e4v4wAS1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.1) |
| W [auth AT] | TTL, ATPgrasp_YheCD | e4v4wAT1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| Z [auth B2] | TTL, ATPgrasp_YheCD | e4v4wB21 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| AA [auth B3] | TTL, ATPgrasp_YheCD | e4v4wB31 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| BA [auth B5] | TTL, ATPgrasp_YheCD | e4v4wB51 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| CA [auth BA] | TTL, ATPgrasp_YheCD | e4v4wBA1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| DA [auth BB] | PemK_toxin | e4v4wBB1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| EA [auth BC] | TTL, ATPgrasp_YheCD | e4v4wBC1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| FA [auth BD] | TTL, ATPgrasp_YheCD | e4v4wBD1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| GA [auth BE] | TTL, ATPgrasp_YheCD | e4v4wBE1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| HA [auth BF] | TTL, ATPgrasp_YheCD | e4v4wBF2 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| HA [auth BF] | PemK_toxin | e4v4wBF1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| IA [auth BG] | TTL, ATPgrasp_YheCD | e4v4wBG1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| JA [auth BH] | TTL, ATPgrasp_YheCD | e4v4wBH1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| KA [auth BI] | TTL, ATPgrasp_YheCD | e4v4wBI1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| LA [auth BJ] | PemK_toxin | e4v4wBJ1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| MA [auth BK] | Ribosomal_L19 | e4v4wBK1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| NA [auth BL] | TTL, ATPgrasp_YheCD | e4v4wBL1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| OA [auth BM] | PemK_toxin | e4v4wBM1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| PA [auth BN] | Ribosomal_L19 | e4v4wBN1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| QA [auth BO] | PemK_toxin | e4v4wBO1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| RA [auth BQ] | TTL, ATPgrasp_YheCD | e4v4wBQ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| SA [auth BR] | TTL, ATPgrasp_YheCD | e4v4wBR1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| TA [auth BS] | TTL, ATPgrasp_YheCD | e4v4wBS1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| UA [auth BT] | TTL, ATPgrasp_YheCD | e4v4wBT1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| VA [auth BU] | TTL, ATPgrasp_YheCD | e4v4wBU1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| WA [auth BW] | TTL, ATPgrasp_YheCD | e4v4wBW1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| XA [auth BX] | TTL, ATPgrasp_YheCD | e4v4wBX1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| YA [auth BZ] | Beta-Casp | e4v4wBZ1 | A: a/b three-layered sandwiches | X: Glycosyl hydrolase domain-like | H: Glycoside hydrolase family 127 middle domain-related | T: Glycoside hydrolase family 127 middle domain-related | F: Beta-Casp | ECOD (v294.1) |
| ZA [auth B1] | PemK_toxin | e4v4wB11 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| E [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| F [auth AC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| F [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| G [auth AD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| G [auth AD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| H [auth AE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| H [auth AE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| I [auth AF] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| J [auth AG] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| K [auth AH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| L [auth AI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| M [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| N [auth AK] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| O [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| P [auth AM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| Q [auth AN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| R [auth AO] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| S [auth AP] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| T [auth AQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| U [auth AR] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| V [auth AS] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| W [auth AT] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| Z [auth B2] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| AA [auth B3], BA [auth B5] | PF16320 | Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N) | Ribosomal protein L7/L12 dimerisation domain | This is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1]. | Domain |
| AA [auth B3], BA [auth B5] | PF00542 | Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12) | Ribosomal protein L7/L12 C-terminal domain | Domain | |
| CA [auth BA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| CA [auth BA] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| DA [auth BB] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| EA [auth BC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| FA [auth BD] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| FA [auth BD] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| GA [auth BE] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| HA [auth BF] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| HA [auth BF] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| IA [auth BG] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| IA [auth BG] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| JA [auth BH] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| KA [auth BI] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| LA [auth BJ] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| MA [auth BK] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| NA [auth BL] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| OA [auth BM] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| PA [auth BN] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| QA [auth BO] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| RA [auth BQ] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| SA [auth BR] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| TA [auth BS] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| TA [auth BS] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| UA [auth BT] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| VA [auth BU] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| WA [auth BW] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| XA [auth BX] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| YA [auth BZ] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| ZA [auth B1] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |














