4UZ0 | pdb_00004uz0

Crystal Structure of apoptosis repressor with CARD (ARC)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	IL8	e4uz0B1	A: a/b three-layered sandwiches	X: Ribosomal protein S7	H: Ribosomal protein S7	T: Ribosomal protein S7	F: IL8	ECOD (v294.1)
A	Beta-lactamase	e4uz0A1	A: a/b three-layered sandwiches	X: Ribosomal protein S7	H: HypA Ni-binding domain	T: HypA Ni-binding domain	F: Beta-lactamase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
A	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00619	Caspase recruitment domain (CARD)	Caspase recruitment domain	Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold .	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	NUCLEOLAR PROTEIN 3	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding RNA binding nucleic acid binding enzyme regulator activity cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process protein binding enzyme binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding RNA binding nucleic acid binding enzyme regulator activity cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process protein binding enzyme binding protease binding caspase binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding death effector domain binding protein domain specific binding identical protein binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of muscle adaptation multicellular organismal process negative regulation of muscle adaptation muscle atrophy system process regulation of biological process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of muscle adaptation multicellular organismal process negative regulation of muscle adaptation muscle atrophy system process regulation of biological process response to stimulus negative regulation of response to stimulus regulation of system process biological regulation negative regulation of biological process regulation of muscle atrophy muscle system process regulation of muscle system process negative regulation of muscle atrophy muscle adaptation regulation of response to stimulus regulation of multicellular organismal process negative regulation of multicellular organismal process cellular response to stimulus regulation of cellular process cellular response to oxygen levels cellular response to hypoxia regulation of cellular response to stress regulation of signal transduction regulation of programmed cell death intracellular signal transduction cell communication negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway response to decreased oxygen levels negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of apoptotic process intrinsic apoptotic signaling pathway in response to hypoxia response to hypoxia response to chemical response to oxygen levels response to abiotic stimulus regulation of apoptotic signaling pathway regulation of cellular response to hypoxia signaling negative regulation of signaling negative regulation of intracellular signal transduction cellular response to decreased oxygen levels regulation of intrinsic apoptotic signaling pathway negative regulation of cell communication cellular response to stress regulation of intracellular signal transduction response to stress regulation of response to stress negative regulation of cellular process regulation of signaling regulation of hypoxia-induced intrinsic apoptotic signaling pathway negative regulation of signal transduction negative regulation of cellular response to hypoxia apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway cellular response to chemical stimulus negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway regulation of cell communication apoptotic process programmed cell death ribonucleoprotein complex biogenesis RNA metabolic process mRNA processing protein-RNA complex assembly nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process spliceosomal complex assembly protein-RNA complex organization RNA processing mRNA splice site recognition RNA splicing primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome metabolic process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process response to ischemia regulation of biosynthetic process regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of metabolic process non-canonical NF-kappaB signal transduction regulation of non-canonical NF-kappaB signal transduction intracellular signaling cassette regulation of cellular component organization apoptotic mitochondrial changes regulation of release of cytochrome c from mitochondria negative regulation of release of cytochrome c from mitochondria mitochondrion organization negative regulation of cellular component organization regulation of organelle organization organelle organization release of cytochrome c from mitochondria negative regulation of organelle organization regulation of mitochondrion organization intrinsic apoptotic signaling pathway in response to oxidative stress regulation of oxidative stress-induced intrinsic apoptotic signaling pathway negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway blood vessel remodeling tissue remodeling negative regulation of mitochondrial membrane permeability negative regulation of mitochondrial membrane permeability involved in apoptotic process negative regulation of membrane permeability regulation of membrane permeability regulation of biological quality regulation of mitochondrial membrane permeability involved in apoptotic process regulation of mitochondrial membrane permeability response to injury involved in regulation of muscle adaptation response to wounding negative regulation of cardiac muscle cell apoptotic process muscle cell apoptotic process regulation of cardiac muscle cell apoptotic process regulation of muscle cell apoptotic process cardiac muscle cell apoptotic process regulation of striated muscle cell apoptotic process striated muscle cell apoptotic process negative regulation of muscle cell apoptotic process negative regulation of striated muscle cell apoptotic process extrinsic apoptotic signaling pathway negative regulation of extrinsic apoptotic signaling pathway cell surface receptor signaling pathway regulation of extrinsic apoptotic signaling pathway programmed necrotic cell death negative regulation of programmed necrotic cell death regulation of programmed necrotic cell death release of sequestered calcium ion into cytosol by endoplasmic reticulum calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport sarcoplasmic reticulum calcium ion transport release of sequestered calcium ion into cytosol by sarcoplasmic reticulum establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport localization release of sequestered calcium ion into cytosol intercellular transport monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport response to cytokine cytokine-mediated signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus regulation of tumor necrosis factor-mediated signaling pathway regulation of cytokine-mediated signaling pathway negative regulation of tumor necrosis factor-mediated signaling pathway response to peptide regulation of response to cytokine stimulus negative regulation of response to cytokine stimulus negative regulation of cytokine-mediated signaling pathway response to tumor necrosis factor	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen membrane cytosol endomembrane system sarcoplasm endoplasmic reticulum sarcoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR052685	Apoptosis Repressor CARD Domain-Containing Protein	Family
A, B	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B	IPR001315	CARD domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O60936	myoclonus, familial, 1 astrocytic tumor Electron Transport Chain Deficiencies, Mitochondrial malignant ependymoma myoclonus, familial Sjogren syndrome atypical teratoid rhabdoid tumor esophageal adenocarcinoma subependymal giant cell astrocytoma cutaneous lupus erythematosus inborn mitochondrial metabolism disorder

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.