4UYP | pdb_00004uyp

High resolution structure of the third cohesin ScaC in complex with the ScaB dockerin with a mutation in the N-terminal helix (IN to SI) from Acetivibrio cellulolyticus displaying a type I interaction.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4uypd_	All alpha proteins	Type I dockerin domain	Type I dockerin domain	automated matches	automated matches	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)
B	d4uypb_	All alpha proteins	Type I dockerin domain	Type I dockerin domain	automated matches	automated matches	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)
C	d4uypc1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)
C	d4uypc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)
C	d4uypc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)
A	d4uypa1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)
A	d4uypa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)
A	d4uypa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Acetivibrio cellulolyticus ) [TaxId: 35830 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ribosomal_S7	e4uypD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Ribosomal_S7	ECOD (v294.1)
B	Ribosomal_S7	e4uypB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Ribosomal_S7	ECOD (v294.1)
C	Ribosomal_S7	e4uypC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Ribosomal_S7	ECOD (v294.1)
A	Ribosomal_S7	e4uypA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Ribosomal_S7	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.1330.10	Mainly Alpha	Orthogonal Bundle	Type 1 dockerin domain	Dockerin domain	CATH (4.3.0)
B	1.10.1330.10	Mainly Alpha	Orthogonal Bundle	Type 1 dockerin domain	Dockerin domain	CATH (4.3.0)
C	2.60.40.680	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.680	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Cellulosomal scaffoldin adaptor protein B	binding carbohydrate binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process polysaccharide metabolic process catabolic process polysaccharide catabolic process carbohydrate catabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process macromolecule catabolic process	cellular anatomical structure extracellular region
A, C	Cellulosomal scaffoldin anchoring protein C	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process polysaccharide metabolic process catabolic process polysaccharide catabolic process carbohydrate catabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process macromolecule catabolic process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR002105	Dockerin type I repeat	Repeat
B, D	IPR051441	Selenoprotein W and related	Family
B, D	IPR016134	Dockerin domain	Domain
B, D	IPR036439	Dockerin domain superfamily	Homologous Superfamily
B, D	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
B, D	IPR002102	Cellulosome anchoring protein, cohesin domain	Domain
A, C	IPR051465	Cell Envelope Structural Component	Family
A, C	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
A, C	IPR002102	Cellulosome anchoring protein, cohesin domain	Domain
A, C	IPR001119	S-layer homology domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.