4UPH | pdb_00004uph

Crystal Structure of Phosphonate Monoester Hydrolase of Agrobacterium radiobacter

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Phosphonate monoester hydrolases-like	8045402	4004457	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Alkaline phosphatase-like	8090532	3001353	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Arylsulfatase, C-terminal domain-like	8090533	3002305	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Arylsulfatase, C-terminal domain-like	8090533	3002305	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Alkaline phosphatase-like	8090532	3001353	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Alkaline phosphatase-like	8090532	3001353	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Arylsulfatase, C-terminal domain-like	8090533	3002305	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Alkaline phosphatase-like	8090532	3001353	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Arylsulfatase, C-terminal domain-like	8090533	3002305	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Beta-lactamase	e4uphA1	A: a/b three-layered sandwiches	X: Ribosomal protein S7	H: HypA Ni-binding domain	T: HypA Ni-binding domain	F: Beta-lactamase	ECOD (v294.1)
B	Beta-lactamase	e4uphB1	A: a/b three-layered sandwiches	X: Ribosomal protein S7	H: HypA Ni-binding domain	T: HypA Ni-binding domain	F: Beta-lactamase	ECOD (v294.1)
C	Beta-lactamase	e4uphC1	A: a/b three-layered sandwiches	X: Ribosomal protein S7	H: HypA Ni-binding domain	T: HypA Ni-binding domain	F: Beta-lactamase	ECOD (v294.1)
D	Beta-lactamase	e4uphD1	A: a/b three-layered sandwiches	X: Ribosomal protein S7	H: HypA Ni-binding domain	T: HypA Ni-binding domain	F: Beta-lactamase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)
B	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)
C	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)
D	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	SULFATASE (SULFURIC ESTER HYDROLASE) PROTEIN	cation binding ion binding binding metal ion binding small molecule binding hydrolase activity, acting on ester bonds hydrolase activity catalytic activity sulfuric ester hydrolase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000917	Sulfatase, N-terminal	Domain
A, B, C, D	IPR017850	Alkaline-phosphatase-like, core domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	DDZ	Parent Component: ALA RESID: AA0492 PSI-MOD : L-3,3-dihydroxyoalanine (Cys) MOD:01444 , L-3,3-dihydroxyoalanine (Ser) MOD:01445 , L-3,3-dihydroxyoalanine MOD:01448

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.