4UMM
The Cryo-EM structure of the palindromic DNA-bound USP-EcR nuclear receptor reveals an asymmetric organization with allosteric domain positioning
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth E] | SCOP2 Family | Nuclear receptor | 8068355 | 4003622 | SCOP2 (2022-06-29) |
D [auth E] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8068356 | 3000068 | SCOP2 (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8032546 | 3001442 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8036574 | 3001442 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-C4 | e4ummA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
D [auth E] | zf-C4 | e4ummE1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
E [auth F] | Hormone_recep | e4ummF1 | A: alpha arrays | X: Nuclear receptor ligand-binding domain (From Topology) | H: Nuclear receptor ligand-binding domain (From Topology) | T: Nuclear receptor ligand-binding domain | F: Hormone_recep | ECOD (1.6) |
F [auth G] | Hormone_recep | e4ummG1 | A: alpha arrays | X: Nuclear receptor ligand-binding domain (From Topology) | H: Nuclear receptor ligand-binding domain (From Topology) | T: Nuclear receptor ligand-binding domain | F: Hormone_recep | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth E] | PF00105 | Zinc finger, C4 type (two domains) (zf-C4) | Zinc finger, C4 type (two domains) | In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other. | Domain |
E [auth F] | PF00104 | Ligand-binding domain of nuclear hormone receptor (Hormone_recep) | Ligand-binding domain of nuclear hormone receptor | This all helical domain is involved in binding the hormone in these receptors. | Domain |