Crystal structure of the human RGMB-BMP2 complex, crystal form 2
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d4ui0b_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Transforming growth factor (TGF)-beta | Bone morphogenetic protein-2 (BMP-2) | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| A | d4ui0a_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Transforming growth factor (TGF)-beta | Bone morphogenetic protein-2 (BMP-2) | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2 Family | RGM family, N-terminal helical domain | 8048358 | 4006069 | SCOP2 (2022-06-29) |
| C | SCOP2 Superfamily | RGM family, N-terminal helical domain | 8107356 | 3002873 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | Cystine-knot cytokines | 8042164 | 3000846 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Cystine-knot cytokines | 8042164 | 3000846 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | RGM_N_N | e4ui0C1 | A: alpha bundles | X: Spectrin repeat-like | H: Repulsive guidance molecule (RGM) N-terminal domain (From Topology) | T: Repulsive guidance molecule (RGM) N-terminal domain | F: RGM_N_N | ECOD (1.6) |
| B | TGF_beta | e4ui0B1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
| A | TGF_beta | e4ui0A1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| A | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF06535 | Repulsive guidance molecule (RGM) N-terminal domain (RGM_N) | Repulsive guidance molecule (RGM) N-terminal domain | This entry represents the small N-terminal three helical bundle domain found at the N-terminus of proteins in the Repulsive Guidance Molecule (RGM) family, which is involved in various functions related to nervous system development and signaling. Me ... | Domain | |
| PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR010536 | Repulsive guidance molecule, N-terminal | Domain | |
| IPR009496 | Repulsive guidance molecule, C-terminal | Domain | |
| IPR040287 | Repulsive guidance molecule | Family | |
| IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
| IPR047953 | Bone morphogenetic protein 2, TGF-beta-like domain | Domain | |
| IPR017948 | Transforming growth factor beta, conserved site | Conserved Site | |
| IPR001839 | Transforming growth factor-beta, C-terminal | Domain | |
| IPR015615 | Transforming growth factor-beta-related | Family | |
| IPR001111 | TGF-beta, propeptide | Domain |














