4UDK | pdb_00004udk

Crystal structure of b-1,4-mannopyranosyl-chitobiose phosphorylase at 1.76 Angstrom from unknown human gut bacteria (Uhgb_MP) in complex with N-acetyl-D-glucosamine, beta-D-mannopyranose and inorganic phosphate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d4udke_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(uncultured organism ) [TaxId: 155900 ],	SCOPe (2.08)
F	d4udkf_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(uncultured organism ) [TaxId: 155900 ],	SCOPe (2.08)
D	d4udkd_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(uncultured organism ) [TaxId: 155900 ],	SCOPe (2.08)
C	d4udkc_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(uncultured organism ) [TaxId: 155900 ],	SCOPe (2.08)
B	d4udkb_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(uncultured organism ) [TaxId: 155900 ],	SCOPe (2.08)
A	d4udka_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(uncultured organism ) [TaxId: 155900 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Furanosidase-like	8089502	3000845	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Furanosidase-like	8089502	3000845	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Furanosidase-like	8089502	3000845	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Furanosidase-like	8089502	3000845	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Furanosidase-like	8089502	3000845	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Furanosidase-like	8089502	3000845	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	RPE65	e4udkE1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
F	RPE65	e4udkF1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
D	RPE65	e4udkD1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
C	RPE65	e4udkC1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
B	RPE65	e4udkB1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
A	RPE65	e4udkA1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
F	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
D	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
C	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
B	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
A	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	UHGB_MP	glycosyltransferase activity transferase activity catalytic activity	-	-
A, B, C, D, F	UHGB_MP	glycosyltransferase activity transferase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR007184	Mannoside phosphorylase	Family
E	IPR023296	Glycosyl hydrolase, five-bladed beta-propeller domain superfamily	Homologous Superfamily
A, B, C, D, F	IPR007184	Mannoside phosphorylase	Family
A, B, C, D, F	IPR023296	Glycosyl hydrolase, five-bladed beta-propeller domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.