4UD1 | pdb_00004ud1

Structure of the N Terminal domain of the MERS CoV nucleocapsid

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8080137	3000498	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8080137	3000498	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8080137	3000498	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8080137	3000498	SCOP2B (2022-06-29)
A	SCOP2 Family	SARS coronavirus nucleoprotein RNA-binding domain-like	8080136	4001881	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8080137	3000498	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Corona_nucleoca_1st	e4ud1E1	A: beta complex topology	X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	F: Corona_nucleoca_1st	ECOD (1.6)
D	Corona_nucleoca_1st	e4ud1D1	A: beta complex topology	X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	F: Corona_nucleoca_1st	ECOD (1.6)
C	Corona_nucleoca_1st	e4ud1C1	A: beta complex topology	X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	F: Corona_nucleoca_1st	ECOD (1.6)
B	Corona_nucleoca_1st	e4ud1B1	A: beta complex topology	X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	F: Corona_nucleoca_1st	ECOD (1.6)
A	Corona_nucleoca_1st	e4ud1A1	A: beta complex topology	X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology)	T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	F: Corona_nucleoca_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF00937	Coronavirus nucleocapsid (CoV_nucleocap)	Coronavirus nucleocapsid	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	N PROTEIN	RNA binding binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR001218	Nucleocapsid protein, coronavirus	Family
A, B, C, D, E	IPR044344	Nucleocapsid (N) protein, C-terminal domain, coronavirus	Domain
A, B, C, D, E	IPR037195	Nucleocapsid protein, N-terminal	Homologous Superfamily
A, B, C, D, E	IPR044345	Nucleocapsid (N) protein, N-terminal domain, coronavirus	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.