4TKO | pdb_00004tko

Structure of the periplasmic adaptor protein EmrA


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]HlyD_D23_Ce4tkoB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HlyD_D23_CECOD (1.6)
A [auth B]HlyD_1st_2e4tkoB3 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: HlyD_1st_2ECOD (1.6)
A [auth B]Biotin_lipoyl_1e4tkoB2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoyl_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF25963AAEA-like beta-barrel domain (Beta-barrel_AAEA)AAEA-like beta-barrel domainThis domain is found in the AaeA protein which is a component of the p-hydroxybenzoic acid (pHBA) efflux pump in Escherichia coli [1] and related proteins. AaeA forms an efflux pump with AaeB, which functions to export certain aromatic carboxylic aci ...This domain is found in the AaeA protein which is a component of the p-hydroxybenzoic acid (pHBA) efflux pump in Escherichia coli [1] and related proteins. AaeA forms an efflux pump with AaeB, which functions to export certain aromatic carboxylic acids from the cell. The AaeAB efflux system serves as a 'metabolic relief valve' to alleviate toxic effects of imbalanced metabolism by eliminating specific compounds when they accumulate to high levels in the cell [1]. The domain represented in this entry folds into a six-stranded closed beta-barrel with a greek-key topology which has a structural similarity to the C-terminal domain of alanine racemase. This domain is interrupted by the barrel-sandwich hybrid domain which is inserted after the first beta-strand of the barrel. This model does not include the N-terminal strand.
Domain
A [auth B]PF25973CzcB-like, barrel-sandwich hybrid domain (BSH_CzcB)CzcB-like, barrel-sandwich hybrid domainThis domain is found in the Cobalt-zinc-cadmium resistance protein CzcB and its paralogue Nickel and cobalt resistance protein CnrB from Cupriavidus metallidurans and related proteins. CzcB is a crucial component of the CzcCBA protein complex, which ...This domain is found in the Cobalt-zinc-cadmium resistance protein CzcB and its paralogue Nickel and cobalt resistance protein CnrB from Cupriavidus metallidurans and related proteins. CzcB is a crucial component of the CzcCBA protein complex, which mediates heavy metal resistance in bacteria through an active cation efflux mechanism [1]. CzcB binds to CzcA, which in turn is bound to CzcC, forming the complete CzcCBA complex.
Domain