4RZ8

Crystal structure of HIV-1 gp120 core in complex with NBD-11021, a small molecule CD4-antagonist

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B Superfamilygp120 core8096276 3001390 SCOP2B (2022-06-29)
BSCOP2B Superfamilygp120 core8096276 3001390 SCOP2B (2022-06-29)
DSCOP2B Superfamilygp120 core8096276 3001390 SCOP2B (2022-06-29)
CSCOP2B Superfamilygp120 core8096276 3001390 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00516e4rz8A1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
APF00516e4rz8A2 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
BPF00516e4rz8B2 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
BPF00516e4rz8B1 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
DPF00516e4rz8D1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
DPF00516e4rz8D2 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
CPF00516e4rz8C2 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
CPF00516e4rz8C1 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.170.40.20 Mainly Beta Beta Complex HIV Envelope Protein Gp120 Chain GCATH (4.3.0)
B2.170.40.20 Mainly Beta Beta Complex HIV Envelope Protein Gp120 Chain GCATH (4.3.0)
D2.170.40.20 Mainly Beta Beta Complex HIV Envelope Protein Gp120 Chain GCATH (4.3.0)
C2.170.40.20 Mainly Beta Beta Complex HIV Envelope Protein Gp120 Chain GCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Envelope glycoprotein gp120- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
A, B, C, D
IPR036377Gp120 core superfamilyHomologous Superfamily