4RVP | pdb_00004rvp

Crystal structure of superoxide dismutase from sedum alfredii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4rvpa_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	automated matches	automated matches	(Sedum alfredii ) [TaxId: 439688 ],	SCOPe (2.08)
B	d4rvpb_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	automated matches	automated matches	(Sedum alfredii ) [TaxId: 439688 ],	SCOPe (2.08)
C	d4rvpc_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	automated matches	automated matches	(Sedum alfredii ) [TaxId: 439688 ],	SCOPe (2.08)
D	d4rvpd_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	automated matches	automated matches	(Sedum alfredii ) [TaxId: 439688 ],	SCOPe (2.08)
E	d4rvpe_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	automated matches	automated matches	(Sedum alfredii ) [TaxId: 439688 ],	SCOPe (2.08)
F	d4rvpf_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	automated matches	automated matches	(Sedum alfredii ) [TaxId: 439688 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cu, Zn superoxide dismutase-like	8062174	4007548	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cu, Zn superoxide dismutase-like	8062175	3002059	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062175	3002059	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062175	3002059	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062175	3002059	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062175	3002059	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062175	3002059	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Sod_Cu	e4rvpA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Cu,Zn superoxide dismutase-like	F: Sod_Cu	ECOD (1.6)
B	Sod_Cu	e4rvpB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Cu,Zn superoxide dismutase-like	F: Sod_Cu	ECOD (1.6)
C	Sod_Cu	e4rvpC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Cu,Zn superoxide dismutase-like	F: Sod_Cu	ECOD (1.6)
D	Sod_Cu	e4rvpD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Cu,Zn superoxide dismutase-like	F: Sod_Cu	ECOD (1.6)
E	Sod_Cu	e4rvpE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Cu,Zn superoxide dismutase-like	F: Sod_Cu	ECOD (1.6)
F	Sod_Cu	e4rvpF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Cu,Zn superoxide dismutase-like	F: Sod_Cu	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (utative)
C	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	superoxide dismutase	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	Family
A, B, C, D, E A, B, C, D, E, F	IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR018152	Superoxide dismutase, copper/zinc, binding site	Binding Site
A, B, C, D, E A, B, C, D, E, F	IPR001424	Superoxide dismutase, copper/zinc binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.