4RUB
A CRYSTAL FORM OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE FROM NICOTIANA TABACUM IN THE ACTIVATED STATE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043670 | 3000552 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035389 | 3001258 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043670 | 3000552 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035389 | 3001258 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043670 | 3000552 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035389 | 3001258 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043670 | 3000552 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035389 | 3001258 | SCOP2B (2022-06-29) |
B [auth S] | SCOP2B Superfamily | RuBisCO, small subunit | 8035797 | 3001622 | SCOP2B (2022-06-29) |
D [auth T] | SCOP2B Superfamily | RuBisCO, small subunit | 8035797 | 3001622 | SCOP2B (2022-06-29) |
F [auth U] | SCOP2B Superfamily | RuBisCO, small subunit | 8035797 | 3001622 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | RuBisCO, small subunit | 8035797 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RuBisCO_large_N | e4rubA1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
A | RuBisCO_large | e4rubA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
C [auth B] | RuBisCO_large_N | e4rubB1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
C [auth B] | RuBisCO_large | e4rubB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
E [auth C] | RuBisCO_large_N | e4rubC1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
E [auth C] | RuBisCO_large | e4rubC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
G [auth D] | RuBisCO_large_N | e4rubD1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
G [auth D] | RuBisCO_large | e4rubD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
B [auth S] | RuBisCO_small | e4rubS1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
D [auth T] | RuBisCO_small | e4rubT1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
F [auth U] | RuBisCO_small | e4rubU1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
H [auth V] | RuBisCO_small | e4rubV1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B], E [auth C], G [auth D] | PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain |
A, C [auth B], E [auth C], G [auth D] | PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
B [auth S], D [auth T], F [auth U], H [auth V] | PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | - | Domain |