4RQN | pdb_00004rqn

Crystal structure of the native BICC1 SAM Domain R924E mutant

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	DUF433	e4rqnC1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: DUF433	ECOD (v294.1)
B	DUF433	e4rqnB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: DUF433	ECOD (v294.1)
A	DUF433	e4rqnA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: DUF433	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
B	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
A	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Protein bicaudal C homolog 1	RNA binding binding nucleic acid binding	developmental process multicellular organism development multicellular organismal process determination of bilateral symmetry anatomical structure development pattern specification process determination of left/right symmetry left/right pattern formation regionalization specification of symmetry heart development animal organ development circulatory system development system development developmental process multicellular organism development multicellular organismal process determination of bilateral symmetry anatomical structure development pattern specification process determination of left/right symmetry left/right pattern formation regionalization specification of symmetry heart development animal organ development circulatory system development system development regulation of cellular process catabolic process negative regulation of biological process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process negative regulation of cellular process RNA catabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process mRNA catabolic process regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process mRNA metabolic process nucleic acid metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process cellular response to stimulus response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway signal transduction Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication kidney development renal system development	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR037974	BICC1, SAM domain	Domain
A, B, C	IPR047549	BICC1, first type I KH domain	Domain
A, B, C	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A, B, C	IPR047554	BICC1, second type I KH	Domain
A, B, C	IPR004087	K Homology domain	Domain
A, B, C	IPR047553	BICC1, third type I KH domain	Domain
A, B, C	IPR036612	K Homology domain, type 1 superfamily	Homologous Superfamily
A, B, C	IPR004088	K Homology domain, type 1	Domain
A, B, C	IPR054727	Protein bicaudal C homolog 1, KH-like domain	Domain
A, B, C	IPR001660	Sterile alpha motif domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q9H694	renal dysplasia, cystic, susceptibility to pancreatic intraductal papillary-mucinous neoplasm Polycystic Kidney, Autosomal Dominant ulcerative colitis adrenal cortex carcinoma breast carcinoma depressive disorder invasive ductal breast carcinoma malignant ependymoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema congenital anomaly of kidney and urinary tract gastric carcinoma lung cancer renal dysplasia, cystic, susceptibility to pancreatic intraductal papillary-mucinous neoplasm Polycystic Kidney, Autosomal Dominant ulcerative colitis adrenal cortex carcinoma breast carcinoma depressive disorder invasive ductal breast carcinoma malignant ependymoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema congenital anomaly of kidney and urinary tract gastric carcinoma lung cancer malignant mesothelioma open-angle glaucoma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer spina bifida breast cancer cystic fibrosis interstitial cystitis lung carcinoma medulloblastoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.