4RML | pdb_00004rml

Crystal structure of the Olfactomedin domain of latrophilin 3 in C2221 crystal form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Olfactomedin-like	8052986	3002154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	OLF	e4rmlA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: OLF	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02191	Olfactomedin-like domain (OLF)	Olfactomedin-like domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Latrophilin-3	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding protein binding cell adhesion mediator activity carbohydrate binding	developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis synapse assembly system development positive regulation of nervous system development regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process regulation of multicellular organismal process regulation of synapse structure or activity regulation of synapse assembly regulation of biological quality positive regulation of cellular process regulation of multicellular organismal development regulation of biological process positive regulation of cellular component biogenesis biological regulation regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization positive regulation of multicellular organismal process positive regulation of synapse assembly cellular response to stimulus response to stimulus signaling adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction cell surface receptor signaling pathway Rho-activating G protein-coupled receptor signaling pathway behavior locomotory behavior locomotion involved in locomotory behavior locomotion neuron migration cellular developmental process generation of neurons neurogenesis cell differentiation cell migration cell motility response to chemical response to oxygen-containing compound response to nitrogen compound response to cocaine response to alkaloid maintenance of synapse structure postsynapse organization cellular component maintenance cell junction maintenance organelle organization maintenance of postsynaptic specialization structure postsynaptic density organization postsynaptic specialization organization	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction glutamatergic synapse Schaffer collateral - CA1 synapse cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction glutamatergic synapse Schaffer collateral - CA1 synapse axon cell projection neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR017983	GPCR, family 2, secretin-like, conserved site	Conserved Site
A	IPR036445	GPCR family 2, extracellular hormone receptor domain superfamily	Homologous Superfamily
A	IPR000832	GPCR, family 2, secretin-like	Family
A	IPR043159	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Homologous Superfamily
A	IPR000203	GPS motif	Conserved Site
A	IPR003112	Olfactomedin-like domain	Domain
A	IPR017981	GPCR, family 2-like, 7TM	Domain
A	IPR003924	GPCR, family 2, latrophilin	Family
A	IPR001879	GPCR, family 2, extracellular hormone receptor domain	Domain
A	IPR003334	GPCR, family 2, latrophilin, C-terminal	Domain
A	IPR032471	AGRL2-4 , GAIN subdomain A	Domain
A	IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain	Domain
A	IPR046338	GAIN domain superfamily	Homologous Superfamily
A	IPR057244	GAIN, subdomain B	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.