4RA6 | pdb_00004ra6

Crystal structure of linker less Pyrococcus furiosus L-asparaginase

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth Q]	Asparaginase_C	e4ra6Q1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: Asparaginase_C	ECOD (v294.1)
B	Asparaginase_C	e4ra6B1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: Asparaginase_C	ECOD (v294.1)
C [auth P]	Asparaginase_C	e4ra6P1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: Asparaginase_C	ECOD (v294.1)
A	Asparaginase_C	e4ra6A1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: Asparaginase_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth Q]	3.40.50.40	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.40	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C [auth P]	3.40.50.1170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	L-asparaginase, N-terminal domain	CATH (4.3.0)
A	3.40.50.1170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	L-asparaginase, N-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D [auth Q]	PF17763	Glutaminase/Asparaginase C-terminal domain (Asparaginase_C)	Glutaminase/Asparaginase C-terminal domain	This domain is found at the C-terminus of asparaginase enzymes.	Domain
A, C [auth P]	PF00710	Asparaginase, N-terminal (Asparaginase)	Asparaginase, N-terminal	This is the N-terminal domain of this enzyme.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D [auth Q]	L-asparaginase	asparaginase activity amidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	amino acid metabolic process primary metabolic process metabolic process cellular process	-
A, C [auth P]	L-asparaginase	asparaginase activity amidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	amino acid metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D [auth Q]	IPR027473	L-asparaginase, C-terminal	Homologous Superfamily
B, D [auth Q]	IPR041725	Type I (cytosolic) L-asparaginase	Family
B, D [auth Q]	IPR037152	L-asparaginase, N-terminal domain superfamily	Homologous Superfamily
B, D [auth Q]	IPR040919	Asparaginase/glutaminase, C-terminal	Domain
B, D [auth Q]	IPR027475	Asparaginase/glutaminase, active site 2	Active Site
B, D [auth Q]	IPR006033	Type I L-asparaginase family	Family
B, D [auth Q]	IPR036152	Asparaginase/glutaminase-like superfamily	Homologous Superfamily
B, D [auth Q]	IPR027474	L-asparaginase, N-terminal	Domain
B, D [auth Q]	IPR006034	Asparaginase/glutaminase-like	Family
A, C [auth P]	IPR027473	L-asparaginase, C-terminal	Homologous Superfamily
A, C [auth P]	IPR041725	Type I (cytosolic) L-asparaginase	Family
A, C [auth P]	IPR037152	L-asparaginase, N-terminal domain superfamily	Homologous Superfamily
A, C [auth P]	IPR040919	Asparaginase/glutaminase, C-terminal	Domain
A, C [auth P]	IPR027475	Asparaginase/glutaminase, active site 2	Active Site
A, C [auth P]	IPR006033	Type I L-asparaginase family	Family
A, C [auth P]	IPR036152	Asparaginase/glutaminase-like superfamily	Homologous Superfamily
A, C [auth P]	IPR027474	L-asparaginase, N-terminal	Domain
A, C [auth P]	IPR006034	Asparaginase/glutaminase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.